Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B06
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    46   5e-06
SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy...    27   2.0  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    26   3.4  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    26   4.5  

>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 45.6 bits (103), Expect = 5e-06
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
 Frame = +3

Query: 105 APAAPAQSAGKPRGRRTEPVDDDSAVKK-FGSAKAISSAQFFG----EQDSRWEKESNLS 269
           A  A A++A K R  +   V+  +  +  F S K+ISS Q+FG    + ++  E +  LS
Sbjct: 354 ASNARAKAAAKARELKKNEVNAPTYARDHFASQKSISSDQYFGRGSFDPEAAAEAQERLS 413

Query: 270 RFQGSTSISSADYFGSDGQRPAQRNSAFNVSAPDLDEVRESVRAGVTRVAGRLSSLANGV 449
            F+ +T+ISS  YFG +     +  S+    +  L ++ E+    +  +   +   A  +
Sbjct: 414 SFRDATAISSKSYFGEEEDENEEGESSHRPDSAYLRDIAETATEDIEAIKVAIHQGAEKL 473

Query: 450 VSSIQE 467
              IQ+
Sbjct: 474 SDFIQK 479


>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 136

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +3

Query: 144 GRRTEPVDDDSAVKKFGSAKAISSAQFFGEQDSRWEKESNLSRFQGSTSISSADYFGSDG 323
           G+R     D ++ KK  + K  S  +     +   +K   LS F+G+  +   +Y+  DG
Sbjct: 3   GKRVIASGDKASSKKPKTEKQ-SDHELHWALNETEKKRITLSEFRGTRYVHIREYYEKDG 61

Query: 324 QR-PAQRNSAFNVS 362
              P ++  A N++
Sbjct: 62  DMLPGKKGIALNIN 75


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +3

Query: 30  ASDTVQNIEPEVSRAVHTMFTPEERAPAAPAQSAGKPRGRR----TEPVDDDSAVKKFGS 197
           A    + +EP  S A+ T+  P +  P+A   +A      R    TEP +  S+     S
Sbjct: 108 ADQVDEPLEPIASSALGTVEPPTDNKPSASTSTAVPTTEARNTSITEPANSPSSSSSSAS 167

Query: 198 AKAISSAQ 221
            K+ ++ Q
Sbjct: 168 TKSTATTQ 175


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 12  LPASYSASDTVQNIEPEVSRAVHTMFTPEERAPAAPA 122
           +P    ASD +  + P+V R   T   PE RA A+ A
Sbjct: 286 VPDPAEASDFLPELIPDVERIAQTAAMPEVRALASHA 322


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 466 SCIEDTTPLAREDNRPATRVTPARTDSRTSSRSGAE 359
           + +E +T  +  +  PAT V+P  T   T+S++G++
Sbjct: 348 TAVESSTEPSTSNGFPATSVSPPLTIDLTNSQTGSD 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,670
Number of Sequences: 5004
Number of extensions: 28093
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)