Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B04
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0256 + 21331396-21332268 33 0.14
11_04_0090 - 13391028-13391117,13391369-13391502,13391532-133916... 31 0.55
03_01_0178 + 1437263-1438017,1438754-1438858,1438950-1439072,143... 28 3.9
10_08_0206 + 15809261-15809390,15810655-15810763,15811237-158112... 28 5.1
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 28 5.1
07_03_1164 + 24451808-24451868,24452690-24452923,24453735-244537... 28 5.1
03_04_0112 - 17375871-17376099,17377021-17377054,17377237-173774... 28 5.1
02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715 28 5.1
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 27 6.8
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 27 6.8
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 27 8.9
11_02_0017 + 7404766-7405239 27 8.9
10_08_0779 - 20497718-20498773 27 8.9
06_03_0854 + 25400855-25403741,25406174-25407708 27 8.9
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817... 27 8.9
04_03_0576 + 17374494-17374538,17374645-17374902 27 8.9
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 27 8.9
>02_04_0256 + 21331396-21332268
Length = 290
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -1
Query: 161 SESTRLPAHPGVAPLLRLIIILFDVVARLFNEHVPAVDADQENR 30
S + RL AHPG P +RLI++ D +A LF A AD + R
Sbjct: 139 SRAQRLLAHPGRLPPVRLILV--DSIASLFRADFDASPADLKRR 180
>11_04_0090 -
13391028-13391117,13391369-13391502,13391532-13391659,
13391684-13391718,13391719-13392159
Length = 275
Score = 31.1 bits (67), Expect = 0.55
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 123 PTAPADHHTVRCSSQALQRARTG 55
PTAP HH++ CS RA TG
Sbjct: 44 PTAPPKHHSLSCSGSQAPRATTG 66
>03_01_0178 +
1437263-1438017,1438754-1438858,1438950-1439072,
1439908-1440078,1440163-1440292,1440372-1440581,
1440675-1440773
Length = 530
Score = 28.3 bits (60), Expect = 3.9
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 123 GNSRVRRQAGALTINSDGTS--GAIVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLA 296
G++R +G S G+ GA + +G+ ++S LG +L AT GLA
Sbjct: 160 GSTRSTAASGMSATTSGGSERDGATPRSTASGSAGPEVSHLGWGHWFTLRELEEATDGLA 219
Query: 297 YDNVNGHG 320
+NV G G
Sbjct: 220 EENVIGEG 227
>10_08_0206 +
15809261-15809390,15810655-15810763,15811237-15811265,
15811721-15813048
Length = 531
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = -1
Query: 497 VVQSATNSVEIGNLRNAG---HVLSSESLCAEVMVIIVEQVDFASGGQLV 357
+ Q A+ ++G L G H+ +S+ + A+ + ++ EQ+D+A+ L+
Sbjct: 414 ISQLASTPADVGLLTKKGILVHLENSDEMAAKKLSMLCEQIDYATEDYLI 463
>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 39 LVGVNSRYVLVEEPGYYIEQYDDQPEQWGNSRVRRQAGALTINSDGTSGAIVKV 200
L G+ SR V P + ++ Y D+ EQW R R + L I+ + + G+ +V
Sbjct: 886 LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935
>07_03_1164 +
24451808-24451868,24452690-24452923,24453735-24453768,
24454372-24454627
Length = 194
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 13 PSYSSCLFSWSASTAGTCSLKSLATTSNSM 102
PS S C F SAS AGT + ++ T+ +M
Sbjct: 98 PSVSGCSFPASASGAGTSTTPTMGGTTGTM 127
>03_04_0112 -
17375871-17376099,17377021-17377054,17377237-17377470,
17377636-17377705
Length = 188
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 13 PSYSSCLFSWSASTAGTCSLKSLATTSNSMMISRSSGATPGCAG 144
PS+S C F SAS AGT L S + + +S G G G
Sbjct: 101 PSFSGCTFPSSASAAGTTGL-SPGVGTGTGTLSPGGGIGTGTNG 143
>02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715
Length = 1536
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 25 SCLFSWSASTAGTCSLKSLATTSNSMMISRSSGATPGCAGK 147
SC S S + + +CS + T +S +RSS A G AG+
Sbjct: 480 SCSSSQSLNNSQSCSSEHAKTIGSSKEDARSSTAASGIAGR 520
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 147 AGALTINSDGTSGAIVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 320
AG + + G V + G +NH +S +G GA TAG AY+ +N G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -2
Query: 313 PLTLSYANPAVAAPNFIWLVRSTEPRALSLWFSL-PVIGTLTIAPEVPSELIVRAPACRR 137
P TL +PA AA + IW +P ++ S P + APE P L A R
Sbjct: 426 PKTLRIDDPAEAAKSSIWATLGIKPDDKGIFKSFQPNVAKNGTAPESPQALQANPAAFSR 485
Query: 136 T 134
+
Sbjct: 486 S 486
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 176 TVRVDSEST-RLPAHPGVAPLLRLIIILFDVVA 81
T+R+D+ S + A P +AP L +I+ L VVA
Sbjct: 167 TLRIDNRSEPKFKASPAMAPRLVIILFLLAVVA 199
>11_02_0017 + 7404766-7405239
Length = 157
Score = 27.1 bits (57), Expect = 8.9
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +3
Query: 273 GAATAGLAYDNVNGHGA-TLTNTHIPGFGDKLTAAGKVNLFHNDNHDLSAKAFATKNMPS 449
G+ +AGL GA T T + +GD G L + D A T ++ +
Sbjct: 41 GSGSAGLGSGGSVAIGALTAAVTTMLDYGDHDDNHGLGRLGGSIACDRGAGGSTTSDLAA 100
Query: 450 IPQVPDFNTVGGGLDYMFN 506
VP+ N G +DY +N
Sbjct: 101 SRSVPNDNGTDGSIDYNYN 119
>10_08_0779 - 20497718-20498773
Length = 351
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 34 FSWSASTAGTCSLKSLATTSNSMMISRSSGATPGCAGKRVLSLSTL 171
++W S A TC L L+ S++++ S G + R+L L+ L
Sbjct: 106 WAWPPSLASTCGLARLSRDDASLLLNGSWVMVAGDSQARLLVLALL 151
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 503 EHVVQSATNSVEIGNLRNAGHVLSSESLCAEVMVII 396
EH + V I N GH SE+ CA +VI+
Sbjct: 1081 EHGLGRGRGCVAIANAAGRGHGRGSETKCAPTVVIV 1116
>06_03_0734 -
23980576-23980671,23980799-23981338,23981493-23981714,
23981791-23982144,23982460-23982546
Length = 432
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 354 GDKLTAAGKVNLFHNDNHDLSAKAFATKNMPSIPQ 458
GD+++AA + +D+ +S K+F T MP PQ
Sbjct: 49 GDEISAAAEDENDDDDDGTVSVKSFETCAMPQEPQ 83
>04_03_0576 + 17374494-17374538,17374645-17374902
Length = 100
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 382 STCSTMITMTSAQRLSLLRTCPAFLKFPISTLLVAD 489
+T +T T+ A+ + L T P + F STLL+AD
Sbjct: 63 ATRATAETLPQAKEVDLSPTAPVEVLFAASTLLMAD 98
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 196 LTIAPEV-PSELIVRAPACRRTLELPHC 116
+ IA +V P EL+V PA R +E+P+C
Sbjct: 132 VVIAHDVDPIELVVWLPALCRKMEIPYC 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,292,904
Number of Sequences: 37544
Number of extensions: 329282
Number of successful extensions: 1008
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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