Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B04
(515 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_242| Best HMM Match : AFP (HMM E-Value=0.45) 30 0.98
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0) 30 1.3
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039) 29 2.3
SB_54151| Best HMM Match : PAN (HMM E-Value=0.00084) 29 3.0
SB_18509| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8) 28 5.3
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32) 28 5.3
SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0) 28 5.3
SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9) 27 6.9
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27) 27 9.2
SB_40007| Best HMM Match : Arm (HMM E-Value=0.84) 27 9.2
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 27 9.2
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0) 27 9.2
SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1778
Score = 33.5 bits (73), Expect = 0.11
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = +3
Query: 102 DDQPEQWGNSRVRRQAGALTINSDGTSGAIVKVPITGNENHKLSALGSVDLTNQMKLGAA 281
D++P V+ + TIN + +K + GN + L A S N K G
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707
Query: 282 TAGLAY-DNVNGHGATLTNTH-IPGFGDKLTAAGKVN 386
++Y DN+N A T+ IPG K + KVN
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSKTGSDSKVN 744
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 150 PLAGAPWSCPTAPADHHTVRCSSQALQRART 58
P G WSC TA +H VR + + +R RT
Sbjct: 1363 PAQGNAWSCGTAGRNHVRVRDGTMSGKRTRT 1393
>SB_242| Best HMM Match : AFP (HMM E-Value=0.45)
Length = 147
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 7 CSPSYSSCLFSWSASTAGTCSLKSLATTSNSMMISRSS 120
C+PSY+ C S++++T+ TC+ +TTS + S +S
Sbjct: 4 CTPSYT-CTTSYTSTTSYTCTTSYTSTTSYTSTTSYTS 40
>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 751
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +3
Query: 318 GATLTNTHIPGFGDKLTAAGKVNLFHNDNHDLSAKAFATKNMPSIPQ-VPDFNTVGGG 488
G+T T IPG G + GK ++ N H S A P VP+ T G G
Sbjct: 322 GSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGKGEEPTIVPEMTTQGAG 379
>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
Length = 685
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 262 WLVRSTEPRALSLWFSLPVIGTLTIAPEVPSELIV 158
W+V ++EP LS + +I T +I P P I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506
>SB_54151| Best HMM Match : PAN (HMM E-Value=0.00084)
Length = 326
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -1
Query: 302 VVCQSSCSGSQLHLVSEINGAKSTELVVFVASYRYLDYST*GTVRVDSESTR 147
V C +G LV+ K + + F A YRY+ GTV V S + +
Sbjct: 142 VYCDMKTNGGGWTLVTRNEPLKRSLVTTFYADYRYISTEKLGTVLVTSPAVQ 193
>SB_18509| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 318 GATLTNTHIPGFGDKLTAAGKVNLFHNDNHDLSAKAFATKNMPS 449
G T+ P FG++ ++NLF+ +N DLSA+ +PS
Sbjct: 72 GKRTTHNCKPNFGNQSNLCNQLNLFNFEN-DLSARDMPRNVVPS 114
>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
Length = 245
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 4 RCSPSYSSCLFSWSASTAGTCSLKSLATTSNSMMISRS 117
RC+ Y+S + SA+T G CS+ S TSNS S S
Sbjct: 45 RCT--YTSDSSTTSATTIGVCSIISCTYTSNSATSSGS 80
>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
Length = 808
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 348 GFGDKLTAAGKVNLFHNDNHDLSAKAFAT 434
G D LT G VN+FHN DL++++ +T
Sbjct: 612 GLSD-LTIDGHVNIFHNQGTDLNSQSGST 639
>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
Length = 646
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +3
Query: 213 NENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTNTHIPGFGDKLTAAGKVNLF 392
N H + G ++ + G T L+ + +G+G +LT++ FG K+ + K+ +
Sbjct: 429 NRTHPVKYYGPINYRTDVTSG--TTHLSVVDADGNGVSLTSSINKYFGSKIRSK-KLGII 485
Query: 393 HND 401
+ND
Sbjct: 486 YND 488
>SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9)
Length = 349
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/92 (21%), Positives = 39/92 (42%)
Frame = +3
Query: 216 ENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTNTHIPGFGDKLTAAGKVNLFH 395
+N+K S D ++ K A T+GLA + +G ++P +++ K N
Sbjct: 83 DNYKKKKTKSKDNNSETKAKAGTSGLAKNKTKDNG----TPNLPSLFERIK---KKNNAT 135
Query: 396 NDNHDLSAKAFATKNMPSIPQVPDFNTVGGGL 491
+ S + P++P++ F+T L
Sbjct: 136 KNGETTSQVTINSSGTPALPKLASFDTENSSL 167
>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
Length = 601
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 365 QLVTETRDVSV-CKSRSVSIDIVVCQSSCSGSQLHLVSEI 249
Q ET S CK+ S+S+ VC S S +V E+
Sbjct: 494 QNAAETEKFSTYCKANSLSVQTTVCDMKTSKSAAEIVKEL 533
>SB_40007| Best HMM Match : Arm (HMM E-Value=0.84)
Length = 274
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 422 LCAEVMVIIVEQVDFASGGQLVTETRDVSVCKSRSVSI 309
+ AE +VE + ASG ++V RD+SV S S +I
Sbjct: 1 MAAEKCKELVENISNASGDEIVAFLRDLSVLISSSPNI 38
>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 1336
Score = 27.1 bits (57), Expect = 9.2
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +3
Query: 54 SRYVLVEEPGYYIEQYDDQPEQWGNSRVRRQAGALTINSDGTSGAIVKVPITGNENHKLS 233
+R + EP ++ +DQ E +S +R +AG +D G + + T N NH
Sbjct: 1183 ARKAQINEPPSPLKVQEDQRETEAHSPIRTRAGREATCNDHLKGCVNQA--TCN-NHLKG 1239
Query: 234 ALGSVDLTNQMKLGAATAGLAYDNVNGHGATLT-NTHIPGFGDKLT 368
+ + +K G D++ G T N H+ G ++ T
Sbjct: 1240 CVNQATCNDHLK-GCVNQATCNDHLKGCVNQATCNDHLKGCVNQAT 1284
>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 2538
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -2
Query: 448 LGMFLVAKAFALRSWLSLWNRLTLPAAVSLSPKPGM*VFVRVAPCPLTLSYA 293
+ L+A +A+++ N L +PAA S PKP V V+ +P + SY+
Sbjct: 401 ISQILIAAGYAVKTSEFNPNPLRIPAAKSTPPKPAP-VQVQASPQMPSFSYS 451
>SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +1
Query: 4 RCSPSYSSCLFSWSASTAGTCSLKSLATTSNSMMISRSSGATPGCAG 144
+C Y S + C LK A TSN +I G CAG
Sbjct: 150 KCEKVYDPVYGSDGKNYDNECELKRAACTSNRRIILAGRGRVHPCAG 196
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,187,210
Number of Sequences: 59808
Number of extensions: 355566
Number of successful extensions: 1022
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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