Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B02
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    25   3.5  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    25   3.5  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   3.5  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   6.1  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    25   6.1  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    25   6.1  

>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 224 YFYKKQKDQLPDLKPHL 274
           YF+ KQ+  L  LKPHL
Sbjct: 96  YFFLKQRYALSSLKPHL 112


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 245 DQLPDLKPHLDKEINFHSDQFRRREDAFNRHKTKRAELEKK*T*HIPFES 394
           D + D KP   KE + HSD     EDA N        +E K +   P E+
Sbjct: 201 DCIWDKKPCSAKESDVHSDDGTIEEDASNAENPNLHYVELKTSKKYPLEN 250


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 291 KFISLSR*GFKSGSWSF 241
           +F+ LS  GFK  SWSF
Sbjct: 572 EFLDLSLQGFKDNSWSF 588


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 224  YFYKKQKDQLPDLKPHLDKEINFHSDQFRR 313
            YF   + + L DLK  L K + ++  QF +
Sbjct: 1042 YFVLLRGETLKDLKKRLQKRLGYNDTQFSK 1071


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = -2

Query: 109 YISNCSCKRYS--WF*KIHFQFLDLFITNSISF 17
           Y S C+    S  WF      F   FITNSI F
Sbjct: 369 YRSKCAAVATSANWFWNFLISFFTPFITNSIGF 401


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 288 TSTVTNSGVAKTPSTATRPNGLNWRRSEHNTYHSSP 395
           +S+  +SGV+   +T TRP+ L+  R  +    + P
Sbjct: 271 SSSAPSSGVSSVLNTPTRPHALSTPRIRYGPQPTDP 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,787
Number of Sequences: 5004
Number of extensions: 21251
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)