Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A24
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 31   0.40 
SB_52444| Best HMM Match : Copine (HMM E-Value=3.9e-16)                31   0.53 
SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)                  29   1.2  
SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                29   2.2  
SB_18612| Best HMM Match : DUF1186 (HMM E-Value=2.4)                   28   3.8  
SB_9786| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               27   6.6  
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               27   6.6  
SB_4382| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               27   6.6  
SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +2

Query: 83  MAPAKLYHFPVSGPSRGALLAARAVGVPIEVEIVNLAKKEQLKENFVKLNPQHCVPTLK 259
           MA  KLY +P S  ++  L+AA   G  IEV      K     E F+K  P   VP  +
Sbjct: 1   MAAGKLYTYPDSFRAQKILIAAEYSGTKIEVPAFTFGKDNHTAE-FLKKFPLGKVPAFE 58


>SB_52444| Best HMM Match : Copine (HMM E-Value=3.9e-16)
          Length = 356

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +2

Query: 131 GALLAARAVGVPIEVEIVNLAKKEQLKENFVKLNPQHCVPTLKEDDGFVLWESRAIACYL 310
           G +      G   EV++V  A+K   K+ F K +P       KED  FV+     + CY 
Sbjct: 80  GQVTTEEVAGTNDEVQMVLRAQKLDNKDFFGKSDPYLEFSRAKEDGSFVVVHRTEVNCYD 139

Query: 311 AEKYGTDD 334
            +  G+ D
Sbjct: 140 WDDDGSHD 147


>SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)
          Length = 834

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 188 LAKKEQLKENFVKLNPQHCVPTLKEDDGFVLWESRAIACYLAEKYGTD 331
           + K      N +K+   H V T  ++    +W+SR +AC +  K   D
Sbjct: 128 IKKAHSCPVNCLKVISDHLVATGDDEGSVKVWDSRTVACVMEMKENED 175


>SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 243 QCCGFNFTKFSFNCSFFAKFTISTSIGTPTALAASK 136
           QCC F  TK   +     KFT+   IG   AL  SK
Sbjct: 363 QCCAFKNTKDVKSKENLCKFTLPLLIGLSQALGVSK 398


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 330 SVPY-FSAK*QAIARLSHKTNPSSSFKVGTQCCGFNFTKFSFNCSFF 193
           S PY F  K + + RLS  + P +  K   +  G  FTKF F+   F
Sbjct: 108 SSPYPFPTKFKEVLRLSQPSAPPALLKTSKRTDGKRFTKFIFSGKTF 154


>SB_18612| Best HMM Match : DUF1186 (HMM E-Value=2.4)
          Length = 692

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 188 LAKKEQLKENFVKLNPQHCVPTLKEDDGFVLWESRAIACYLAEKYGTDDQFYPKDLKR 361
           L KK+  K+    +  QH  P      GF+    RA AC++   +G  D  +  +L R
Sbjct: 34  LLKKKNYKDQMETMLVQHVYPEFTSTQGFM----RARACWMLHVFGEIDFKHEANLAR 87


>SB_9786| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 129

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 268 WICFMGKSCYCLLLSGKVWY 327
           WI F G SCY   + GK WY
Sbjct: 7   WIPFKG-SCYVTFVDGKNWY 25


>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 3445

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 268 WICFMGKSCYCLLLSGKVWY 327
           WI F G SCY   + GK WY
Sbjct: 7   WIPFKG-SCYVTFVDGKNWY 25


>SB_4382| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 492

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 268 WICFMGKSCYCLLLSGKVWY 327
           WI F G SCY   + GK WY
Sbjct: 370 WIPFKG-SCYVTFVDGKNWY 388


>SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 285 SHKTNPSSSFKVGTQCCGFNFTKFSFNCSFFAKFTISTSIGT 160
           + +TN S +F    QC   N TKF + C    K   S   GT
Sbjct: 677 ARRTNISQAFYSDKQC-RINITKFIYECESCPKTKYSIERGT 717


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,574,566
Number of Sequences: 59808
Number of extensions: 208977
Number of successful extensions: 502
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)