Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A23
         (112 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    24   3.0  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    22   9.3  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    22   9.3  

>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 104 GDGALLAPVDLVRVGDVRGQV*TWHR 27
           GDGA   P   V V D RG+   WH+
Sbjct: 269 GDGAFYGPKIDVMVADARGK---WHQ 291


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 69  DQVDWRKKGSVTEV 110
           +++ W KKGSV E+
Sbjct: 304 NKIPWSKKGSVLEI 317


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 3    CTVSRAMC-AVPRSYLAAHVTYPDQVDW 83
            C  S  +C + P S L +HVT  ++ +W
Sbjct: 967  CGNSFGVCVSSPNSGLTSHVTCAEKANW 994


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 386,911
Number of Sequences: 5004
Number of extensions: 3624
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 18
effective length of database: 2,272,406
effective search space used: 40903308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)