Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A23
(112 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0339 + 42848065-42848943,42849308-42849526 32 0.076
01_05_0693 - 24339917-24340524,24340778-24341252 30 0.23
04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590... 30 0.30
09_04_0611 - 18948169-18948788,18948876-18948981,18949063-18949386 29 0.53
05_06_0015 + 24953918-24954359,24955622-24955857,24955945-249560... 28 0.93
05_01_0064 + 454786-455646,456537-456752 28 0.93
02_05_0514 + 29686263-29686728,29687078-29687313,29687435-296875... 28 0.93
09_06_0288 - 22051412-22051515,22051572-22052103 28 1.2
04_01_0560 - 7183253-7183839,7183935-7184367 27 2.8
06_03_1173 + 28159168-28159173,28159191-28159466 26 3.8
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084... 26 3.8
01_06_1730 + 39494738-39495853 26 3.8
12_01_0990 + 10052430-10052895,10053633-10054219 26 5.0
04_04_1538 + 34239913-34241274,34241468-34241578 26 5.0
07_01_0064 + 463358-464341 25 6.6
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 25 6.6
04_01_0548 + 7103540-7103972,7104081-7104667 25 8.7
>01_07_0339 + 42848065-42848943,42849308-42849526
Length = 365
Score = 31.9 bits (69), Expect = 0.076
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 66 PDQVDWRKKGSVTEV 110
P +VDWRKKG+VTEV
Sbjct: 140 PKEVDWRKKGAVTEV 154
>01_05_0693 - 24339917-24340524,24340778-24341252
Length = 360
Score = 30.3 bits (65), Expect = 0.23
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 66 PDQVDWRKKGSVTEV 110
PD VDWR +G+VTEV
Sbjct: 138 PDSVDWRARGAVTEV 152
>04_04_1385 -
33157557-33157655,33157752-33158201,33158864-33159004,
33159058-33159329,33160371-33160821
Length = 470
Score = 29.9 bits (64), Expect = 0.30
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +3
Query: 42 YLAA-HVTYPDQVDWRKKGSVTEV 110
YLAA + P+ VDWR KG+V E+
Sbjct: 121 YLAADNEALPESVDWRTKGAVAEI 144
>09_04_0611 - 18948169-18948788,18948876-18948981,18949063-18949386
Length = 349
Score = 29.1 bits (62), Expect = 0.53
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 66 PDQVDWRKKGSVTEV 110
P VDWRKKG+V EV
Sbjct: 123 PKSVDWRKKGAVVEV 137
>05_06_0015 +
24953918-24954359,24955622-24955857,24955945-24956085,
24956188-24956619,24956847-24956948
Length = 450
Score = 28.3 bits (60), Expect = 0.93
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 66 PDQVDWRKKGSVTEV 110
PD VDWR+ G+VT+V
Sbjct: 127 PDAVDWRQSGAVTKV 141
>05_01_0064 + 454786-455646,456537-456752
Length = 358
Score = 28.3 bits (60), Expect = 0.93
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 66 PDQVDWRKKGSVTEV 110
P ++DWRKK +VTEV
Sbjct: 142 PKEMDWRKKNAVTEV 156
>02_05_0514 +
29686263-29686728,29687078-29687313,29687435-29687575,
29687685-29687915
Length = 357
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 57 VTYPDQVDWRKKGSVTEV 110
V P VDWRKKG+VT V
Sbjct: 132 VNLPWAVDWRKKGAVTPV 149
>09_06_0288 - 22051412-22051515,22051572-22052103
Length = 211
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 33 PRSYLAAHVTYPDQVDWRKKGSVTEV 110
P Y P VDWR G+VTEV
Sbjct: 146 PEVYFNESAGAPASVDWRASGAVTEV 171
>04_01_0560 - 7183253-7183839,7183935-7184367
Length = 339
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 60 TYPDQVDWRKKGSVTEV 110
T P VDWR KG+VT +
Sbjct: 122 TLPATVDWRTKGAVTPI 138
>06_03_1173 + 28159168-28159173,28159191-28159466
Length = 93
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 23 VRGATFIPGRARHLPGPGRLAQEGLRHRG 109
++G +PG R+L G L +EGL RG
Sbjct: 1 MKGVKHVPGLKRNLISLGTLHEEGLIFRG 29
>04_04_1536 -
34207425-34207490,34207801-34208268,34208345-34208485,
34208582-34208820,34209950-34210436
Length = 466
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 66 PDQVDWRKKGSVTEV 110
P+ VDWR+KG+V V
Sbjct: 142 PESVDWREKGAVAPV 156
>01_06_1730 + 39494738-39495853
Length = 371
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 66 PDQVDWRKKGSVTEV 110
P VDWR+KG+VT V
Sbjct: 136 PRAVDWRRKGAVTGV 150
>12_01_0990 + 10052430-10052895,10053633-10054219
Length = 350
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 66 PDQVDWRKKGSVTEV 110
P VDWR KG+VT +
Sbjct: 135 PASVDWRTKGAVTRI 149
>04_04_1538 + 34239913-34241274,34241468-34241578
Length = 490
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3
Query: 66 PDQVDWRKKGSV 101
PD VDWR KG+V
Sbjct: 156 PDSVDWRDKGAV 167
>07_01_0064 + 463358-464341
Length = 327
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 66 PDQVDWRKKGSVTEV 110
P +VDWR++G+VT V
Sbjct: 105 PAEVDWRQQGAVTGV 119
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 5 YGKSGNVRGATFIPGRARHLPGPGRLAQEGLR 100
+G+ + GA PGR R L PGRL E R
Sbjct: 107 FGEGEALAGAED-PGRIRRLRRPGRLGHEDAR 137
>04_01_0548 + 7103540-7103972,7104081-7104667
Length = 339
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 66 PDQVDWRKKGSVTEV 110
P VDWR KG+VT +
Sbjct: 124 PATVDWRTKGAVTPI 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,170
Number of Sequences: 37544
Number of extensions: 32276
Number of successful extensions: 132
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 14,793,348
effective HSP length: 17
effective length of database: 14,155,100
effective search space used: 268946900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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