Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A23
         (112 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.037
SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   7.3  
SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.7  
SB_21875| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.7  
SB_6730| Best HMM Match : 7tm_1 (HMM E-Value=6.50006e-41)              25   9.7  
SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)                25   9.7  

>SB_11428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 33.1 bits (72), Expect = 0.037
 Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 39  SYLA-AHVTYPDQVDWRKKGSVTEV 110
           ++LA +HV  PD VDWRK+G VT V
Sbjct: 324 AFLAPSHVQVPDTVDWRKEGYVTPV 348


>SB_17376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 51  AHVTYPDQVDWRKKGSVTEV 110
           ++V  P +VDWR KG VT V
Sbjct: 259 SNVQLPAEVDWRDKGFVTAV 278


>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +2

Query: 26  RGATFI--PGRARHLPGPGRLAQEGL 97
           RG  ++  P +A HL GP R+ +EGL
Sbjct: 31  RGNMYVRTPPQACHLAGPVRIVEEGL 56


>SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 20  NVRGATFIPGRARHLPGPGRLAQE 91
           ++ G  F+PG +   PGPG+ + E
Sbjct: 321 SMNGRNFMPGDSTQKPGPGQHSPE 344


>SB_21875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 6   TVSRAMC--AVPRSYLAAHVTYPDQVDWRKK 92
           TVS  +C   +P  Y+  HVT P  VD+  K
Sbjct: 255 TVSYTVCWLPLPLCYMLYHVTGPALVDYNSK 285


>SB_6730| Best HMM Match : 7tm_1 (HMM E-Value=6.50006e-41)
          Length = 396

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 6   TVSRAMC--AVPRSYLAAHVTYPDQVDWRKK 92
           TVS  +C   +P  Y+  HVT P  VD+  K
Sbjct: 255 TVSYTVCWLPLPLCYMLYHVTGPALVDYNSK 285


>SB_39998| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 1220

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 51  AHVTYPDQVDWRKKGSVTEV 110
           ++V  P  VDW +KG VT V
Sbjct: 39  SNVKIPSSVDWSQKGYVTGV 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,348,142
Number of Sequences: 59808
Number of extensions: 34776
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 16,821,457
effective HSP length: 17
effective length of database: 15,804,721
effective search space used: 300289699
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)