Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A23
         (112 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical p...    28   1.0  
AF016448-1|AAB65956.2|  477|Caenorhabditis elegans Temporarily a...    27   1.3  
Z92812-8|CAB07275.1|  337|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z69662-1|CAA93499.1|  359|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z92830-2|CAB07355.2|  330|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical
           protein R09F10.1 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 39  SYLAAHVTYPDQVDWRKKGSVTEV 110
           SYL   V  P  +DWR++G +T +
Sbjct: 160 SYLETGVIRPASIDWREQGKLTPI 183


>AF016448-1|AAB65956.2|  477|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 196 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 66  PDQVDWRKKGSVTEV 110
           P+  DWR+KG+VT+V
Sbjct: 265 PESFDWREKGAVTQV 279


>Z92812-8|CAB07275.1|  337|Caenorhabditis elegans Hypothetical
           protein T03E6.7 protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 39  SYLAA-HVTYPDQVDWRKKGSVTEV 110
           S+LA  +V  PD+VDWR    VT+V
Sbjct: 111 SFLAPFNVQVPDEVDWRDTHLVTDV 135


>Z69662-1|CAA93499.1|  359|Caenorhabditis elegans Hypothetical
           protein F56D5.1 protein.
          Length = 359

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 8   GKSGNVRGATFIPGRARHLPGPGRLAQEG 94
           G+S N+RG +  PG+   + G G+  + G
Sbjct: 229 GRSSNIRGPSGKPGQQGGIGGTGKFGKYG 257


>Z92830-2|CAB07355.2|  330|Caenorhabditis elegans Hypothetical
           protein F11A5.2 protein.
          Length = 330

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 103 VTEPFLRQSTWSG 65
           +T+P+L +STWSG
Sbjct: 67  LTQPYLLKSTWSG 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,946
Number of Sequences: 27780
Number of extensions: 23783
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 12,740,198
effective HSP length: 18
effective length of database: 12,240,158
effective search space used: 220322844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)