Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A23
         (112 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   2.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    19   4.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    19   5.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                19   7.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = +2

Query: 56   RHLPGPGRLAQ-EGLRHRG 109
            R  P P R+   EGL HRG
Sbjct: 1699 RRCPPPPRMGSAEGLSHRG 1717


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 50  RARHLPGPGRLAQEGLRHRG 109
           R   L  PG  A   +RHRG
Sbjct: 194 RVTFLDTPGHAAFISMRHRG 213


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 12  SRAMCAVPRSYLAAHVTYP 68
           S + C+V R  +   V+YP
Sbjct: 328 SNSRCSVKREKIKISVSYP 346


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 42  YLAAHVTYP 68
           Y  AHVT+P
Sbjct: 165 YFTAHVTHP 173


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 47  GRARHLPGPGRLAQ 88
           G  RHLPG  ++ +
Sbjct: 209 GYGRHLPGHAQMGR 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,627
Number of Sequences: 438
Number of extensions: 232
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 17
effective length of database: 138,897
effective search space used:  2639043
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)