Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A22
(311 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340 30 0.33
01_06_1377 + 36764461-36765339 27 3.1
02_04_0367 + 22399785-22399899,22400911-22401102,22401990-224021... 27 4.1
11_06_0708 + 26475306-26478404 26 5.4
11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166 26 5.4
08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201... 26 5.4
03_02_0415 - 8263459-8263611,8263788-8263919,8264841-8264936,826... 26 5.4
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 26 7.2
10_01_0333 + 3675806-3676001,3676783-3677783 25 9.5
01_06_1706 + 39314952-39315166,39316309-39316356,39316405-39316459 25 9.5
>11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340
Length = 369
Score = 30.3 bits (65), Expect = 0.33
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -1
Query: 272 GAAPVFVIDLEEAVVSRSVLSHFTNFVGKPSAFVLDKADPVTHQ 141
G A + V+ E V+R+ ++HF KP +++ D A PV+ +
Sbjct: 98 GDAELLVLRSGEWTVTRAPVAHFVGRADKPPSWITDMAIPVSER 141
>01_06_1377 + 36764461-36765339
Length = 292
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -1
Query: 275 PGAAPVFVIDLEEAVVSRSVLSHFTNFVGKPSAFVLDKADP 153
P AAP+ IDLE VVS L + G A+V+ DP
Sbjct: 5 PPAAPLKAIDLEVTVVSGKHLKNVNWRRGDLRAYVVAYLDP 45
>02_04_0367 +
22399785-22399899,22400911-22401102,22401990-22402117,
22402229-22402384,22402948-22403206,22403762-22403836,
22404288-22404610,22405041-22405274,22405355-22405542,
22405734-22405869,22405963-22406071,22406988-22407090,
22407188-22407374,22407467-22407565,22407666-22407724,
22408581-22408686,22408798-22408962
Length = 877
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 174 RSRQGRPSYSSNFHRSLVF*APALIRIW*NVSHRNAKR 61
R+ + P +S F +VF A + I +W + SHR+ +
Sbjct: 587 RANKRDPQFSKLFFVQVVFVAISSIMVWISTSHRSQNK 624
>11_06_0708 + 26475306-26478404
Length = 1032
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 93 RCGLVQELRRQGFDESLMSNWVCLVENESGRFTDKIGKVTKNGSR 227
RC + ++ R+G ++S + NW+ +++ D I V+ GS+
Sbjct: 45 RC-FISDVERRGMEDSSIHNWISRLKDAMYDADDIIDLVSFEGSK 88
>11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166
Length = 940
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 93 RCGLVQELRRQGFDESLMSNWVCLVENESGRFTDKIGKVTKNGSR 227
RC + ++ R+G ++S + NW+ +++ D I V+ GS+
Sbjct: 45 RC-FISDVERRGMEDSSIHNWISRLKDAMYDADDIIDLVSFEGSK 88
>08_02_1130 +
24517319-24518149,24519374-24519868,24519954-24520179,
24520267-24520291,24520925-24521234,24521328-24521888
Length = 815
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 102 LVQELRRQGFDESLMSNWVCLVENESGRFTDKIGKVTKNG 221
L +LR G +L W C VE + F +G KNG
Sbjct: 352 LCHKLRSMG---ALRDTWHCTVEEQIAMFLTTVGHHKKNG 388
>03_02_0415 -
8263459-8263611,8263788-8263919,8264841-8264936,
8265021-8265137,8265352-8265435,8265517-8265577,
8266217-8266266,8266544-8266633,8267539-8267757,
8269207-8269262,8269469-8269546,8269707-8269811,
8269925-8270069,8270310-8270388,8270470-8270537,
8271550-8271626,8272676-8272712,8273107-8273232,
8273770-8273805
Length = 602
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 272 GAAPVFVIDLEEAVVSRSVLSHFTNFVGKPSAFVLDKAD 156
G P+F D+ E + + S + +G+P+ F L AD
Sbjct: 170 GQNPIFSTDIAEPAEAPAEQSDNKSIIGRPAEFALVDAD 208
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 8 LAWKHNVEVRYIARPFGTRFALRCETFHQMRISAGA 115
+A+ H+++ + +PFG AL +TF+ + +S A
Sbjct: 69 IAYLHHIQRAKLIQPFGCLLALDEKTFNVIALSENA 104
>10_01_0333 + 3675806-3676001,3676783-3677783
Length = 398
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 227 SRSVLSHFTNFVGKPSAFVLDK 162
SR VLS + N G AFVLD+
Sbjct: 332 SRQVLSEYGNMSGATIAFVLDE 353
>01_06_1706 + 39314952-39315166,39316309-39316356,39316405-39316459
Length = 105
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 230 LRPLPDQ*QILVQHRVHSW 286
L PLP I+ +H+VH W
Sbjct: 31 LPPLPPSLAIICKHKVHEW 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,301,172
Number of Sequences: 37544
Number of extensions: 141029
Number of successful extensions: 358
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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