Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A22
         (311 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    30   0.39 
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    28   1.6  
AL117204-42|CAB55146.2|  714|Caenorhabditis elegans Hypothetical...    28   1.6  
Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    26   6.4  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    25   8.4  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    25   8.4  
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    25   8.4  
AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical ...    25   8.4  

>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical protein
            W02C12.1 protein.
          Length = 1372

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 204  KVTKNGSRDYGLFQINDKYWCSTGSTPGKDCHVTC 308
            KV  NG  D G  +I ++Y C  G    +D  V C
Sbjct: 902  KVLPNGRPDVGSLKIKEEYLCQAGQVVVRDLCVPC 936


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical
           protein B0024.8 protein.
          Length = 1185

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 102 LVQELRRQGFDESLMSNWVCLVEN 173
           L+ EL      E + SNW CLVEN
Sbjct: 159 LITELHHILIPELVKSNWTCLVEN 182


>AL117204-42|CAB55146.2|  714|Caenorhabditis elegans Hypothetical
           protein Y116A8C.4 protein.
          Length = 714

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 171 NESG-RFTDKIGKVTKNGSRDYGLFQINDKY 260
           NES     + +  + K G R++GLFQI+ KY
Sbjct: 194 NESDFNLNEMLNNLVKLGQRNFGLFQISFKY 224


>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical protein
            F10F2.2 protein.
          Length = 1343

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 96   CGLVQELRRQGFDESLMSNWVCLVENESGRFTDKIG--KVTKNGS 224
            C L+ +L   G DE      V L ENE GRF    G  K+ KN S
Sbjct: 1168 CQLMAQLGWIG-DEEQKGPTVFLDENECGRFDSSFGPVKIEKNVS 1211


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 151  TGSALSRTKADGLPTKLVK*LRTDLETTASSRSMTNTGA 267
            TGS+L  + +   P K+       ++TT SS S++++G+
Sbjct: 1075 TGSSLPTSSSSSAPVKVSSSKIESMKTTPSSSSVSSSGS 1113


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 75   DAKRFTRCGLVQELRRQGFDESLMSNWVCLVENESGRFTDKI 200
            D +R   C  V E R     + +   W+C  EN+ G  +D++
Sbjct: 3826 DKQRCPTCDDVGEFRCATSGKCIPRRWMCDTENDCGDNSDEL 3867


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 75   DAKRFTRCGLVQELRRQGFDESLMSNWVCLVENESGRFTDKI 200
            D +R   C  V E R     + +   W+C  EN+ G  +D++
Sbjct: 3826 DKQRCPTCDDVGEFRCATSGKCIPRRWMCDTENDCGDNSDEL 3867


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
            protein F07G11.9 protein.
          Length = 2025

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +1

Query: 13   LET*CRSTLYC---SPFWHSLCIAMRNVSPDAD*CRSL 117
            L+  C++   C    PF    CI+ R V+P+ D C  +
Sbjct: 922  LKANCKAKPICLGTGPFKQEQCISSRRVTPENDNCEKI 959


>AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical
           protein Y50D4C.2 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 248 DLEEAVVSRSVLSHFTNFVGKPSAFVLD 165
           D+E  ++S S L+ FTNF   P    LD
Sbjct: 64  DVENLMISNSRLTTFTNFPFMPKLKTLD 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,043,481
Number of Sequences: 27780
Number of extensions: 121732
Number of successful extensions: 324
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)