Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A21
(225 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0216 - 14954047-14956098 32 0.072
11_04_0041 - 12690287-12690816,12691087-12691378 27 1.5
05_03_0212 + 10260690-10261272,10261921-10262435,10262446-102625... 27 1.5
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 26 4.7
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 26 4.7
08_01_0078 - 551178-551897,552168-552197 26 4.7
02_03_0202 + 16359539-16359763,16360113-16360193,16361362-163616... 26 4.7
01_06_0609 + 30583191-30583229,30583799-30583907,30584377-30585518 26 4.7
11_06_0121 - 20330511-20330707,20332250-20332343 25 6.2
04_03_0615 + 18048787-18048865,18048897-18049753 25 6.2
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555... 25 6.2
03_02_0844 + 11695159-11695263,11695402-11695463,11695789-116958... 25 6.2
04_04_1378 + 33105564-33105634,33105786-33106253,33106558-331065... 25 8.2
04_04_0249 - 23894369-23894406,23894584-23894648,23895285-238953... 25 8.2
03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411 25 8.2
>11_04_0216 - 14954047-14956098
Length = 683
Score = 31.9 bits (69), Expect = 0.072
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 176 FGKRETSAGFPRGLNERRIELLPTGVEVQRC 84
FG GF G+ E+R+E P VE+++C
Sbjct: 249 FGSSSDGDGFSDGVEEKRLECDPVSVEIKKC 279
>11_04_0041 - 12690287-12690816,12691087-12691378
Length = 273
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 70 SRLRPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPNIS 183
SRLRP+R S P RS + +S R P+ P S
Sbjct: 138 SRLRPNRCLSEPFRRSGTLVFMSGREEPSFAEPEPEPS 175
>05_03_0212 +
10260690-10261272,10261921-10262435,10262446-10262569,
10262840-10263042,10263169-10263240,10264905-10265007,
10265350-10265582
Length = 610
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 203 INDCFKLEIFGKRETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEI 63
+ D FK + G PRG ++++ L + + CG SLEE+
Sbjct: 443 LRDGFKNILQEDPNMGVGKPRGKAVKKLKQLAEKIGSEMCGTSLEEV 489
>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -2
Query: 161 TSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSVQGVIVTIDEVRVSG 9
TS P LNE+ +P + Q G + +G +VT+ + V G
Sbjct: 900 TSKHPPVALNEQNAVKVPNEPKPQTAGVIISSSIVPTEGTVVTVGSIMVGG 950
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 214 LSFKLMTVLN*KYLENEKLVLGSHEDLMKGVSNFFQPALKSSDVV 80
+ F L L+ K+ N K E + +G QPALKS+ VV
Sbjct: 625 IDFNLANDLHQKFFRNSK-----SETISRGKDTISQPALKSTPVV 664
>08_01_0078 - 551178-551897,552168-552197
Length = 249
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -2
Query: 128 RRIELLPTGVEVQRCGRSLEEIQFSVQGVIVTIDEV 21
RR++ V+RCG L + G IV + V
Sbjct: 126 RRVDFAVVDAGVERCGEVLGAVDVDPMGAIVVVTNV 161
>02_03_0202 +
16359539-16359763,16360113-16360193,16361362-16361600,
16361828-16362029,16362108-16362188,16362272-16362455,
16362625-16362791,16363020-16363802
Length = 653
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 85 HRWTSTPVGRSSIRLSLSPRGNPALVSRF 171
H TS V R +R ++ P+ +PA +SRF
Sbjct: 155 HLKTSPLVLRDEVRSAVPPKWDPAALSRF 183
>01_06_0609 + 30583191-30583229,30583799-30583907,30584377-30585518
Length = 429
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 94 TSTPVGRSSIRLSLSPRGNPALVSRFPNISN 186
T+ VG+ + +++ PRG P V+ P I N
Sbjct: 166 TTVGVGKGGVGVNVKPRGKPVHVNVAPFIYN 196
>11_06_0121 - 20330511-20330707,20332250-20332343
Length = 96
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 82 PHRWTSTPVGRSSIRLSLSPRGNP 153
PH +TP+ S+ SL PR P
Sbjct: 45 PHESLTTPIDTSNTASSLEPRSKP 68
>04_03_0615 + 18048787-18048865,18048897-18049753
Length = 311
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 97 STPVGRSSIRLS--LSPRGNPALVSRFPNI 180
S P R++IRL L+ P L SRFPN+
Sbjct: 24 SFPEQRATIRLDCGLATEAFPTLCSRFPNL 53
>04_03_0147 -
11853940-11854128,11854933-11855013,11855501-11855584,
11855663-11855735,11855888-11855949,11856246-11856327,
11857643-11858262
Length = 396
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 80 RSLEEIQFSVQGVIVTIDEVRVS 12
R ++QF++ G I TID+V S
Sbjct: 216 RDFPDVQFTLNGGITTIDQVTAS 238
>03_02_0844 +
11695159-11695263,11695402-11695463,11695789-11695876,
11695958-11696019,11696250-11696346,11696592-11696984,
11697072-11697611,11697856-11697966,11698102-11698242,
11698290-11698394,11698480-11698557,11699346-11699472,
11699580-11699625,11699709-11699754
Length = 666
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 75 TPTTSLDFNAGWKKFDTP 128
T S+D NAGW FDTP
Sbjct: 363 TAAPSMD-NAGWATFDTP 379
>04_04_1378 +
33105564-33105634,33105786-33106253,33106558-33106583,
33106741-33106771,33106890-33106977,33107094-33107338,
33107339-33107383,33107530-33107621,33107718-33107920,
33108215-33108496
Length = 516
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 167 RETSAGFPRGLNERRIELLPTGVEVQRCGR 78
R S GFPRG ++ R GV + +CGR
Sbjct: 242 RRQSTGFPRGSSKYR------GVTLHKCGR 265
>04_04_0249 -
23894369-23894406,23894584-23894648,23895285-23895372,
23895458-23895562,23895763-23895882,23896016-23896214
Length = 204
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 67 SSRLRPHRWTSTP--VGRSSIRLSLSPRGNPAL 159
S+ +R W + P +GRS R L GNP L
Sbjct: 27 SADVREACWNNAPKVIGRSGDRWRLDANGNPVL 59
>03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411
Length = 1311
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 146 PRGLNERRIELLPTGVEVQRCGRSLEEIQFS 54
P G+++ + LLPTG+++ R + I FS
Sbjct: 885 PLGVSKPKKPLLPTGLDLSRVVEDIAYIGFS 915
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,482,119
Number of Sequences: 37544
Number of extensions: 88258
Number of successful extensions: 270
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -