Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A21
         (225 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X76091-1|CAA53705.1|  723|Homo sapiens DNA binding protein RFX2 ...    28   4.7  
BC071571-1|AAH71571.1|  723|Homo sapiens RFX2 protein protein.         28   4.7  
BC028579-1|AAH28579.1|  723|Homo sapiens regulatory factor X, 2 ...    28   4.7  

>X76091-1|CAA53705.1|  723|Homo sapiens DNA binding protein RFX2
           protein.
          Length = 723

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 11  RSHGLHQS*RLLPGRKTESLQDSDHIAGLQRRLEE 115
           R   +HQ  R  P +KT+SL DS   +GL    E+
Sbjct: 291 RQQPMHQKPRYRPAQKTDSLGDSGSHSGLHSTPEQ 325


>BC071571-1|AAH71571.1|  723|Homo sapiens RFX2 protein protein.
          Length = 723

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 11  RSHGLHQS*RLLPGRKTESLQDSDHIAGLQRRLEE 115
           R   +HQ  R  P +KT+SL DS   +GL    E+
Sbjct: 291 RQQPMHQKPRYRPAQKTDSLGDSGSHSGLHSTPEQ 325


>BC028579-1|AAH28579.1|  723|Homo sapiens regulatory factor X, 2
           (influences HLA class II expression) protein.
          Length = 723

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 11  RSHGLHQS*RLLPGRKTESLQDSDHIAGLQRRLEE 115
           R   +HQ  R  P +KT+SL DS   +GL    E+
Sbjct: 291 RQQPMHQKPRYRPAQKTDSLGDSGSHSGLHSTPEQ 325


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,686,688
Number of Sequences: 237096
Number of extensions: 474001
Number of successful extensions: 997
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 76,859,062
effective HSP length: 53
effective length of database: 64,292,974
effective search space used: 1350152454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)