Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A21
         (225 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   0.59 
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      29   0.59 
Z49967-3|CAA90249.1|   81|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U88181-4|AAU05583.1|  299|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical ...    25   5.5  
U58743-2|AAB00614.1|  298|Caenorhabditis elegans Hypothetical pr...    25   7.2  
L15314-2|AAF99983.1|  322|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF077530-2|AAC26265.1|  436|Caenorhabditis elegans Hypothetical ...    25   9.6  

>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = +1

Query: 16  TRTSSIVTITPWTEN*ISSRLRPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPNISNLKQ 195
           + TS+  TITP   N      R    T TP   S   +S S R  P + SR P +S ++ 
Sbjct: 192 SNTSANATITPMKVNIPIDESRHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQS 251

Query: 196 SL 201
            L
Sbjct: 252 PL 253


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = +1

Query: 16  TRTSSIVTITPWTEN*ISSRLRPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPNISNLKQ 195
           + TS+  TITP   N      R    T TP   S   +S S R  P + SR P +S ++ 
Sbjct: 192 SNTSANATITPMKVNIPIDESRHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQS 251

Query: 196 SL 201
            L
Sbjct: 252 PL 253


>Z49967-3|CAA90249.1|   81|Caenorhabditis elegans Hypothetical
           protein F54C9.3 protein.
          Length = 81

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 21  DFINRNDYSLDGKLNLFKT-PTTSLDFNAGWKKFD 122
           DF+ R++YS + K + FKT    SLD +   +K D
Sbjct: 43  DFLKRDEYSAETKRDKFKTVQVQSLDNSYKGRKTD 77


>U88181-4|AAU05583.1|  299|Caenorhabditis elegans Hypothetical
           protein C55B6.1b protein.
          Length = 299

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 44  LPGRKTESLQDSDHIA 91
           L GRK E + DSDH+A
Sbjct: 225 LLGRKVERMTDSDHVA 240


>U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical
           protein C55B6.1a protein.
          Length = 523

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 44  LPGRKTESLQDSDHIA 91
           L GRK E + DSDH+A
Sbjct: 449 LLGRKVERMTDSDHVA 464


>AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical
           protein Y71G12A.2 protein.
          Length = 611

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 178 YLENEKLVLGSHEDLMKGVSNFFQPALKSSDVVGVLKR 65
           YL  +++++  H    K  SN   P+L+S   VG+++R
Sbjct: 298 YLLCQQIIMSIHLYQQKMKSNDAAPSLRSDCAVGIMQR 335


>U58743-2|AAB00614.1|  298|Caenorhabditis elegans Hypothetical
           protein F39F10.2 protein.
          Length = 298

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 199 MTVLN*KYLENEKLVLGSHEDL 134
           MT +  K+ +N K  LG+H+DL
Sbjct: 224 MTKMKKKFAKNPKKYLGNHQDL 245


>L15314-2|AAF99983.1|  322|Caenorhabditis elegans Hypothetical
           protein K06H7.7 protein.
          Length = 322

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 154 LGSHEDLMKGVSNFFQPALKSSDV 83
           +G+ E++ +G+S+  QP+ KSS V
Sbjct: 94  VGTRENIDEGISDINQPSSKSSGV 117


>AF077530-2|AAC26265.1|  436|Caenorhabditis elegans Hypothetical
           protein C40D2.2 protein.
          Length = 436

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 178 YLENEKLVLGSHEDLMKGVSNFFQPALK 95
           Y++NE +++  H D++     F Q  LK
Sbjct: 111 YVDNESIIIEIHADIVSSTGFFEQKYLK 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,661,742
Number of Sequences: 27780
Number of extensions: 75464
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)