Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A21
         (225 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44020.1 68415.m05473 mitochondrial transcription termination...    28   0.96 
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro...    27   2.2  
At5g45090.1 68418.m05531 lectin-related low similarity to PP2 le...    25   5.1  
At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related...    25   5.1  
At3g49840.1 68416.m05449 proline-rich family protein contains pr...    25   5.1  
At5g67180.1 68418.m08469 AP2 domain-containing transcription fac...    25   6.8  
At5g40100.1 68418.m04864 disease resistance protein (TIR-NBS-LRR...    25   6.8  
At4g36920.1 68417.m05233 floral homeotic protein APETALA2 (AP2) ...    25   6.8  
At5g04700.1 68418.m00478 hypothetical protein                          25   9.0  

>At2g44020.1 68415.m05473 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 507

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 118 SIRLSLSPRGNPALVSRFPNISNLKQSLI 204
           S++L + P G   +V + P I +LKQ++I
Sbjct: 332 SLKLKIDPEGFARVVEKMPQIVSLKQNVI 360


>At2g03140.1 68415.m00267 CAAX amino terminal protease family protein
            very low similarity to SP|Q40863 Late embryogenesis
            abundant protein EMB8 from Picea glauca; contains Pfam
            profile PF02517 CAAX amino terminal protease family
            protein
          Length = 1805

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 20   GLHQS*RLLPGRKTESLQDSDHIAGLQRRLEEVRYA 127
            G H S ++LP RKT+S+++S H   L   L + + A
Sbjct: 1064 GKH-SPKILPERKTDSIENSSHDGYLGEELSKEKIA 1098


>At5g45090.1 68418.m05531 lectin-related low similarity to PP2
           lectin polypeptide [Cucurbita maxima] GI:410437;
           contains Pfam profile PF01582: TIR domain
          Length = 332

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 163 KLVLGSHEDLMKGVSNFFQPALKSSDV 83
           K+     ED+ KG+ NF +P L++ ++
Sbjct: 44  KVHKSQEEDVSKGLINFLEPVLQNKNI 70


>At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related
           protein 2 (PAKRP2) identical to cDNA
           phragmoplast-associated kinesin-related protein 2
           (PAKRP2) GI:16973450
          Length = 869

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -2

Query: 188 KLEIFGKRETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSVQGVIVTIDEVRVSG 9
           +LE+ GK+  +A F  G    +I      VE +R  +S    + S +   + I +V   G
Sbjct: 205 RLEVMGKKAKNASFISGTEAGKISKEIVKVEKRRIVKSTLCNERSSRSHCIIILDVPTVG 264

Query: 8   GR 3
           GR
Sbjct: 265 GR 266


>At3g49840.1 68416.m05449 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 606

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 53  RKTESLQDSDHIAGLQRRLEEV-RYA 127
           R   S+ +  HI GLQRRLE + RYA
Sbjct: 61  RGITSICERLHIHGLQRRLEHIDRYA 86


>At5g67180.1 68418.m08469 AP2 domain-containing transcription
           factor, putative similar to (SP:P47927) Floral homeotic
           protein APETALA2. [Mouse-ear cress] {Arabidopsis
           thaliana}
          Length = 352

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 167 RETSAGFPRGLNERRIELLPTGVEVQRCGR 78
           R  S GFPRG ++ R      GV + +CGR
Sbjct: 176 RRQSTGFPRGSSKYR------GVTLHKCGR 199


>At5g40100.1 68418.m04864 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1017

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 124 RLSLSPRGNPALVSRFPNISNLKQSLI*NL 213
           R S    G P  +  FP+I  LKQ  + NL
Sbjct: 769 RFSYKENGRPVTLHSFPDIPGLKQLELVNL 798


>At4g36920.1 68417.m05233 floral homeotic protein APETALA2 (AP2)
           Identical to (SP:P47927) Floral homeotic protein
           APETALA2. [Mouse-ear cress] {Arabidopsis thaliana}
          Length = 432

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 167 RETSAGFPRGLNERRIELLPTGVEVQRCGR 78
           R  S GFPRG ++ R      GV + +CGR
Sbjct: 211 RRQSTGFPRGSSKYR------GVTLHKCGR 234


>At5g04700.1 68418.m00478 hypothetical protein
          Length = 669

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 21  DFINRNDYSLDGKLNLFKTP 80
           DF+N +  S+D  +NL++TP
Sbjct: 98  DFLNHHPDSVDEWINLYETP 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,443,566
Number of Sequences: 28952
Number of extensions: 72361
Number of successful extensions: 238
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,070,560
effective HSP length: 54
effective length of database: 10,507,152
effective search space used: 210143040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)