Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A20
(275 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 26 0.86
SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 0.86
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 2.0
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 2.0
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 24 3.5
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 24 3.5
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 23 6.1
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 23 6.1
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer... 23 6.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 23 6.1
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 23 6.1
SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces po... 23 6.1
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 23 8.0
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 23 8.0
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 23 8.0
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 23 8.0
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 23 8.0
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 26.2 bits (55), Expect = 0.86
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 265 RMLSSAGCVQSMVNLRLIF-LLAPLPRILPPFTPFL 161
R+ G ++++ L ++F +L L RI+ PFTPF+
Sbjct: 737 RLKGEDGEIETINALNVLFEVLFTLVRIMGPFTPFI 772
>SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 26.2 bits (55), Expect = 0.86
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 52 SGSPGLQESARGTCLLPRWQLQRSPSQRKASYT 150
+G P LQE L P W L+ S S + YT
Sbjct: 8 TGKPWLQEKTPRLHLHPTWDLKASKSLARFPYT 40
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.0 bits (52), Expect = 2.0
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 44 SKLVDPPGCRNRHEARVCCQDGSY-KEARRKERPVTPE--DW*ERSKRWQNSRQRCQEED 214
+KL D R + +AR ++ + KE + +ER + E E W+ S+Q+ E+D
Sbjct: 869 AKLEDARIQREKEKARRLAEEEALLKEKQERERQLQEERQKMQEEVLEWRKSQQKASEDD 928
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.0 bits (52), Expect = 2.0
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = +2
Query: 17 GGSSTGWRRSKLVDPPGCRNRHEARVCCQDGSY 115
GGS W+ V P H VC + G Y
Sbjct: 370 GGSRLFWKNGLFVVGPESAGAHPGPVCYRKGGY 402
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 24.2 bits (50), Expect = 3.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 178 PFTPFLPVFWCNWPF-FATGFFVTAILATDTCL 83
P+TP +F NW F +A AI+A TC+
Sbjct: 179 PYTPVRFMFGLNWSFDYALSI---AIIALQTCM 208
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 24.2 bits (50), Expect = 3.5
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 137 RPVTPEDW*ERSKRWQNSRQR 199
R P++W ER K W+ +++
Sbjct: 229 RDFYPDNWLERQKSWEEEKEQ 249
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 23.4 bits (48), Expect = 6.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 68 CRNRHEARVCCQDGSYKEARRKERPVTPED 157
C N H VC +DG+ ++ +E V +D
Sbjct: 152 CDNGHTFLVCSEDGTARQYDIREPHVCNQD 181
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 23.4 bits (48), Expect = 6.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 199 PLPRILPPFTPFLPVFWCNWPFFATGFFVTAIL 101
P+P +LPP P L + F T F + A +
Sbjct: 650 PIPTVLPPTQPVLEPSYREIVAFITFFLLFAFI 682
>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 250
Score = 23.4 bits (48), Expect = 6.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 245 VCAVNGKFKANLPLGTFAANFATFYSFLTSLLV 147
VC + GK NLP G + N + L L V
Sbjct: 192 VCILKGKTHENLPWGEWCGNTPFAFHPLVVLFV 224
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 23.4 bits (48), Expect = 6.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 146 TPEDW*ERSKRWQNSR 193
TP W SKRW++ R
Sbjct: 1466 TPSQWDSLSKRWRSMR 1481
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 53 VDPPGCRNRHEARVCC--QDGSYK 118
+DPPGC++ +A C +G+Y+
Sbjct: 507 IDPPGCQDIDDALHACVLPNGNYE 530
>SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 164
Score = 23.4 bits (48), Expect = 6.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 269 IQDAILSRVCAVNGKFKANLPLGTFAANF 183
I+ LSR+C V+ KF+A FA+N+
Sbjct: 69 IELPFLSRICPVSDKFQAF--TNAFASNY 95
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 23.0 bits (47), Expect = 8.0
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1
Query: 214 LALNLPLTAHT 246
L+LNLPL AHT
Sbjct: 213 LSLNLPLNAHT 223
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 23.0 bits (47), Expect = 8.0
Identities = 6/9 (66%), Positives = 9/9 (100%)
Frame = -3
Query: 255 PQQGVCSQW 229
P+QG+CS+W
Sbjct: 378 PRQGICSRW 386
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +2
Query: 107 GSYKEARRKERPVTPEDW*ERSKRWQNS 190
G K A++ ++ E W E+ +RW+++
Sbjct: 1282 GILKHAQQHDKMNLKETWYEKLQRWEDA 1309
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 23.0 bits (47), Expect = 8.0
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -1
Query: 200 TFAANFATFYSFLTSL-LV*LAFLCDGLLCNCHLGNRHVPRADSCSPG 60
T A F + FL+S L F + N +GN H+P C+ G
Sbjct: 358 TAAQFFKSMLQFLSSKNLTSTLFKLNADSSNLKIGNGHLPTLIDCNTG 405
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 23.0 bits (47), Expect = 8.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 113 YKEARRKERPVTPEDW*ERSKRWQNSRQRCQEE 211
Y E + RPVT E+W + +N R++ ++E
Sbjct: 64 YTEENVQWRPVTAEEW-KMDLHRKNERKKREKE 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,201,190
Number of Sequences: 5004
Number of extensions: 21108
Number of successful extensions: 47
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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