Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A20
(275 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g01710.1 68415.m00099 DNAJ heat shock N-terminal domain-conta... 31 0.14
At1g70505.1 68414.m08114 expressed protein 28 0.77
At3g50750.1 68416.m05554 brassinosteroid signalling positive reg... 27 1.3
At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo... 27 1.8
At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id... 27 1.8
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id... 27 1.8
At2g05645.1 68415.m00604 hypothetical protein 27 1.8
At2g45280.1 68415.m05636 DNA repair family protein contains simi... 26 3.1
At1g28420.1 68414.m03494 homeobox transcription factor, putative... 26 3.1
At1g24706.1 68414.m03104 expressed protein 25 5.4
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 25 5.4
At5g55780.1 68418.m06952 DC1 domain-containing protein contains ... 25 7.1
At3g15160.1 68416.m01917 expressed protein 25 7.1
At1g66345.1 68414.m07535 pentatricopeptide (PPR) repeat-containi... 25 7.1
At1g52580.1 68414.m05936 rhomboid family protein contains PFAM d... 25 7.1
At5g08490.1 68418.m01005 pentatricopeptide (PPR) repeat-containi... 25 9.4
At5g03460.1 68418.m00302 expressed protein 25 9.4
At4g35090.1 68417.m04984 catalase 2 identical to catalase 2 SP:P... 25 9.4
At4g04760.1 68417.m00698 sugar transporter family protein simila... 25 9.4
At3g20800.1 68416.m02630 rcd1-like cell differentiation protein,... 25 9.4
At2g38250.1 68415.m04697 DNA-binding protein-related contains si... 25 9.4
At2g24180.1 68415.m02889 cytochrome P450 family protein 25 9.4
At1g17150.1 68414.m02091 glycoside hydrolase family 28 protein /... 25 9.4
>At2g01710.1 68415.m00099 DNAJ heat shock N-terminal
domain-containing protein simlar to AHM1 [Triticum
aestivum] GI:6691467; contains Pfam profile PF00226:
DnaJ domain
Length = 311
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 244 CVQSMVNLRLIFLLAPLPRILPPFTPFLPVFWCNWPFFATGF 119
C++ N + F A +P+ LPP P ++C W FF GF
Sbjct: 187 CIRCQ-NCQRAFHAASIPQ-LPPLIPGKDEYYCCWGFFPMGF 226
>At1g70505.1 68414.m08114 expressed protein
Length = 338
Score = 28.3 bits (60), Expect = 0.77
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 163 LPVFWCNWPFFATGFFVTAILATDTCLV 80
+P +W NW FF FV L + L+
Sbjct: 33 IPSYWLNWRFFVCAIFVLTSLFLSSYLI 60
>At3g50750.1 68416.m05554 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 276
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 58 SPGLQESARGTCLLPRWQLQRSPSQRKASYTRRL 159
+P + R LPRWQ P +S TRRL
Sbjct: 159 TPPISSPRRSNPRLPRWQSSNFPVSAPSSPTRRL 192
>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
ribosomal protein L22 (cytosolic), Rattus norvegicus,
PIR:S52084
Length = 124
Score = 27.1 bits (57), Expect = 1.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 219 LKFTIDCTHPAEDSILDV 272
+ FTIDC+ P +D I+++
Sbjct: 16 VSFTIDCSKPVDDKIMEI 33
>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
[Arabidopsis thaliana]
Length = 124
Score = 27.1 bits (57), Expect = 1.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 219 LKFTIDCTHPAEDSILDV 272
+ FTIDC+ P +D I+++
Sbjct: 16 VSFTIDCSKPVDDKIMEI 33
>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
[Arabidopsis thaliana]
Length = 124
Score = 27.1 bits (57), Expect = 1.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 219 LKFTIDCTHPAEDSILDV 272
+ FTIDC+ P +D I+++
Sbjct: 16 VSFTIDCSKPVDDKIMEI 33
>At2g05645.1 68415.m00604 hypothetical protein
Length = 204
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = -2
Query: 220 RLIFLLAPLPRILPPFTPFLPVFWCNWPFFATGFFVTAILATDTCLV 80
R LL P P + P + NW FA+ FV + D+ ++
Sbjct: 131 RPFVLLMPRPLLSSPHSHMFVEHGYNWKLFASNVFVEHLFLEDSSMI 177
>At2g45280.1 68415.m05636 DNA repair family protein contains
similarity to Swiss-Prot:O43502 DNA repair protein RAD51
homolog 3 [Homo sapiens]
Length = 363
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 58 SPGLQESARGTCLLPRWQLQRSPSQR 135
SP ++E++ T ++ W+L SPS R
Sbjct: 9 SPAIEETSLATSVMEAWRLPLSPSIR 34
>At1g28420.1 68414.m03494 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7 GI:19486
[Lycopersicon peruvianum]
Length = 1703
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 62 PGCRNRHEARVCCQDGSYKEARRKE 136
PG RN+ ARV GS ++ +RK+
Sbjct: 1473 PGNRNKKRARVSLGSGSNRKVKRKK 1497
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/53 (22%), Positives = 24/53 (45%)
Frame = +2
Query: 38 RRSKLVDPPGCRNRHEARVCCQDGSYKEARRKERPVTPEDW*ERSKRWQNSRQ 196
+ S ++ G R+ ++ S K ARR P+ +W + +R + R+
Sbjct: 1726 KSSSMIQHGGYLEEPSIRLLGKEASSKMARRDPDPIYDREWEDDKRRAERKRR 1778
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 101 QDGSYKEARRKERPVTPEDW*ERSKRWQNSRQRCQEED 214
Q+ K +R KER T DW E S ++ R +E+D
Sbjct: 485 QEKEEKPSRDKERATTERDWSENSGDRRHKSHR-EEKD 521
>At5g55780.1 68418.m06952 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 685
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 169 PFLPVFWCNWPFFATGFF 116
P +P+FWCN F G F
Sbjct: 117 PVIPLFWCNNKEFRYGKF 134
>At3g15160.1 68416.m01917 expressed protein
Length = 562
Score = 25.0 bits (52), Expect = 7.1
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 259 LSSAGCVQSMVNLRLIFLLAPLPRILPPFTPFL--PVFWCNW 140
++ A C +VN R LLA P +LP F P L + W NW
Sbjct: 121 VAEATCEFLVVNQRK--LLASFPNLLPQFFPLLLKLIAW-NW 159
>At1g66345.1 68414.m07535 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 544
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 89 RVCCQDGSYKEARR 130
RVCC+ G KEA R
Sbjct: 347 RVCCEKGDVKEAER 360
>At1g52580.1 68414.m05936 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 309
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = -2
Query: 199 PLPRILPPFTPFLPVFWCNW--PFFATGFFVT 110
P P P F P +PV W W P FVT
Sbjct: 15 PPPPARPHFRPPIPVPWVAWLVPLILAANFVT 46
>At5g08490.1 68418.m01005 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 849
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 234 DCTHPAEDSILDV 272
DC+HP DSI D+
Sbjct: 823 DCSHPRRDSIFDL 835
>At5g03460.1 68418.m00302 expressed protein
Length = 89
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 244 CVQSMVNLRLIFLLAPLPRILPPFTPFLPVFWCNWPF 134
CV +V L L+ L+ +PRI+ F L W W +
Sbjct: 3 CVMCLVPLFLVPLINLMPRIIDYFMAKL-YAWLGWEY 38
>At4g35090.1 68417.m04984 catalase 2 identical to catalase 2
SP:P25819, GI:17865693 from [Arabidopsis thaliana]
Length = 492
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 47 KLVDPPG-CRNRHEARVCCQDGSYKEARRKERPVTPEDW*ERSKRW 181
K PP C + E + ++ ++KE + R TPE +RW
Sbjct: 405 KYPTPPAVCSGKRERCIIEKENNFKEPGERYRTFTPERQERFIQRW 450
>At4g04760.1 68417.m00698 sugar transporter family protein similar
to sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 467
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 265 RMLSSAGCVQSMVNLRLIFLLAPLPRIL 182
R L+ GC+ S++ L L+F + PR L
Sbjct: 175 RNLAILGCIPSLMVLPLLFFIPESPRWL 202
>At3g20800.1 68416.m02630 rcd1-like cell differentiation protein,
putative similar to protein involved in sexual
development [Schizosaccharomyces pombe] GI:1620896;
contains Pfam profile PF04078: Cell differentiation
family, Rcd1-like
Length = 316
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 244 CVQSMVNLRLIFLLAPLPRILPPF 173
CV S + R++FL A +P L PF
Sbjct: 115 CVASHSDTRMLFLKAHIPLYLYPF 138
>At2g38250.1 68415.m04697 DNA-binding protein-related contains
similarity to DNA-binding protein GI:170271 from
[Nicotiana tabacum]
Length = 289
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 77 RHEARVCCQDGSYKEARRKERPVTPEDW*ERSKRWQNSR 193
RH+ R+ + EAR KER E+W + + + R
Sbjct: 209 RHQVRMESEWREGWEAREKERAEKEEEWRRKMEELEKER 247
>At2g24180.1 68415.m02889 cytochrome P450 family protein
Length = 503
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 217 LIFLLAPLPRILPPFTPFLPV 155
LIF L P+ LPP P LP+
Sbjct: 25 LIFFLLRSPKNLPPGPPRLPI 45
>At1g17150.1 68414.m02091 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Salix gilgiana] GI:6714524; contains
Pfam profile PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 402
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 242 CAVNGKFKANLPLGTFAANFATF 174
C NG K +PLGTF TF
Sbjct: 60 CRWNGPSKMYIPLGTFYLGGVTF 82
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,782,661
Number of Sequences: 28952
Number of extensions: 127840
Number of successful extensions: 350
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 221603184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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