Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A18
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    28   0.53 
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   3.8  
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   5.0  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   6.6  

>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 151 LYYNIVIGRYVSAARITMELKNEGRGEVIRLVVNKLLAESKRN 279
           + +N  I +Y+  + + +E K E   EV    + KLL+ S +N
Sbjct: 185 IQFNSTIPKYIQYSHVDLETKEETLVEVSGRSLRKLLSSSSKN 227


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 157  YNIVIGRYVSAARITMELKNEGRGEVIRLVVNKLL 261
            Y I+I R ++  +I   +KN+  G+V  L+ + +L
Sbjct: 1556 YYIIIKRPIALGKIKRNIKNDRYGDVGELIADFML 1590


>SPAC644.08 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +1

Query: 121 DASALLKYDELYYNIVIGRYVSAARITMELKNEGRGEVIRLVVNKLLAESKRNVVDYAYK 300
           DA  LLKY   YY+  IG           + N    E + L  N    ++ R V  +   
Sbjct: 130 DAGNLLKYFSGYYDTTIGLKTECGSYVKIVGNSNPREWLFLSDNINELKAARKVGLHTGL 189

Query: 301 LVRKGEIGIV-RDYFPIH 351
           +VR G   +V    FP++
Sbjct: 190 VVRPGNDPVVDTSGFPVY 207


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 13  WTGIYERNA--RIESYKMILSIAVLTLLIIQASPIPQEDASALLKYDELYYNIVI 171
           + GI  R+A  R  ++  + S+ + T++ ++     +ED     K+   YY+I +
Sbjct: 66  YPGIIYRSACPRASNFNFLESLHIRTIISLRQEEYSEEDLHYFTKHHINYYHIAM 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,987
Number of Sequences: 5004
Number of extensions: 28955
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)