Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A17
         (184 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    26   0.76 
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    23   4.0  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    23   5.3  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    23   7.0  

>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 82  RIHKLLKKLDRIYNRKQI--KLKLVSNNDYRS 171
           +IHKLL K D  Y +K +   L L+S N + S
Sbjct: 600 KIHKLLPKEDASYEQKVVLLTLSLLSKNKHTS 631


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 163 NRCLKLVLV*FVCDC 119
           N C ++V+  +VCDC
Sbjct: 185 NACREIVIAGYVCDC 199


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 49  DGKALCLLVISRIHKLLKKLDRIYNRKQIKLKLVSN 156
           DG+   LL +  +H L+  +  IY  ++  LKL+ N
Sbjct: 481 DGRFKQLLGLFVVHLLMPGIPLIYYGEEQNLKLLDN 516


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 67  LLVISRIHKLLKKLDRIYNR-KQIKLKL 147
           L+ +S   KLL K++RIY++ +  KL L
Sbjct: 566 LMDVSNFPKLLLKVERIYSQARNWKLNL 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 569,942
Number of Sequences: 5004
Number of extensions: 6776
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)