Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A17
         (184 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1624 + 28204892-28205024,28205160-28205242,28205305-282053...    27   1.6  
10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998     25   6.5  

>07_03_1624 + 28204892-28205024,28205160-28205242,28205305-28205376,
            28205889-28205946,28206554-28206603,28207805-28207873,
            28208183-28208317,28208410-28208581,28208663-28208754,
            28208837-28209244,28209783-28210704,28211592-28211831,
            28211898-28212229,28212460-28212608,28213265-28213841,
            28214078-28214224,28214693-28214968,28215296-28215403,
            28215634-28215839,28216079-28216217,28216329-28216982,
            28218040-28218099,28218234-28218388,28218414-28218636,
            28218729-28218773
          Length = 1834

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 100  KKLDRIYNRKQIKLKLVSNNDY 165
            K L RI+N +Q+ LKL++N  Y
Sbjct: 1337 KVLQRIFNARQLALKLIANVTY 1358


>10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998
          Length = 473

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 46  LDGKALCLLVISRIHKLLKKLDRIYNRKQ 132
           +DGK    +V+ R  +L  +L+ I+NRK+
Sbjct: 445 VDGKDHVTIVVRRQKELAMELEEIWNRKR 473


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,079
Number of Sequences: 37544
Number of extensions: 33831
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 14,793,348
effective HSP length: 40
effective length of database: 13,291,588
effective search space used: 265831760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)