Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A17
         (184 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67500.1 68414.m07688 DNA polymerase family B protein similar...    26   4.0  
At5g41890.1 68418.m05100 GDSL-motif lipase/hydrolase family prot...    25   9.3  

>At1g67500.1 68414.m07688 DNA polymerase family B protein similar to
            SP|Q61493 DNA polymerase zeta catalytic subunit (EC
            2.7.7.7) {Mus musculus}; contains Pfam profile PF00136:
            DNA polymerase family B
          Length = 1890

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 106  LDRIYNRKQIKLKLVSNNDY 165
            L RI+N +Q+ LKL++N  Y
Sbjct: 1455 LHRIFNARQLALKLIANVTY 1474


>At5g41890.1 68418.m05100 GDSL-motif lipase/hydrolase family protein
           similar to  family II lipase EXL3 (GI:15054386), EXL1
           (GI:15054382), EXL2 (GI:15054384) [Arabidopsis
           thaliana]; contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 369

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 55  KALCLLVISRIHKLLKKLDRIYNRKQIKLKLVSNNDYRSECY 180
           +AL L+   +  + + ++ R YN K I      NN+ RSE Y
Sbjct: 228 RALNLIPAGKCSEQVNQVVRGYNMKLIHSLKTLNNELRSEDY 269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,904
Number of Sequences: 28952
Number of extensions: 32304
Number of successful extensions: 82
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 12,070,560
effective HSP length: 40
effective length of database: 10,912,480
effective search space used: 218249600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)