Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A15
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    26   3.6  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.3  
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    25   8.4  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.4  

>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 189 SVRGAK-NRDPCRYIRGAWSECDSKTNIKSRKLTLKKGD 302
           +V G + N  P    +GA   CD  +N  SRK+   K D
Sbjct: 169 TVHGVEFNEPPTNIPKGAIRVCDVSSNFISRKIDFTKHD 207


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 363 EKSAWSECNANGE-MTRTDTLKANSDSSCEPSRRATKKCNKNKQ 491
           EK+   E N   E +  T   +   D+S +PS+ A    NKN +
Sbjct: 66  EKNPIEEANEENESVAATSNERQQHDASNQPSQAAQTTINKNTE 109


>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 88  ICCGLWQGFCCC 123
           +CCGL  G  CC
Sbjct: 69  LCCGLLTGLACC 80


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 243 SECDSKTNIKSRKLTLKKGDPANCDTVKTVQKKCKKACRYEKSAWSECNANGEMTRTDT 419
           S C    ++K+   TL +  P +C+    +   C+ + R+     S  N+NG + R D+
Sbjct: 321 SSCSLSVDVKA---TLLETTPPSCEVSYNLLLTCRSSNRFRLFPASTPNSNG-LCRNDS 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,793
Number of Sequences: 5004
Number of extensions: 30359
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)