Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A15
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0632 - 20112297-20116562                                         30   1.2  
06_03_0942 - 26185898-26185932,26186004-26186379,26186473-261866...    29   2.1  
11_08_0099 + 28342765-28342872,28343016-28343167,28343461-283437...    28   4.8  
05_03_0174 + 9217679-9217799,9217981-9218180                           28   4.8  
03_01_0652 + 4771551-4771821,4771931-4772038,4772744-4773024,477...    28   4.8  
01_01_0903 - 7103091-7103120,7104092-7104651,7105208-7105328,710...    28   4.8  
02_01_0415 + 3037720-3039849                                           27   6.3  
06_02_0276 + 13678457-13678734,13679592-13679931,13680025-136802...    27   8.4  

>07_03_0632 - 20112297-20116562
          Length = 1421

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 34   KAKQGSYHVNTVKTWRTGICCGLWQGFCCCRSHWCQ 141
            K K+G +H  T+  +R    C  W+G+      W +
Sbjct: 1322 KKKRGEWHKETINEYRQKKTCEFWEGWLKYEEEWVE 1357


>06_03_0942 -
           26185898-26185932,26186004-26186379,26186473-26186614,
           26186694-26186820,26186870-26186927,26187520-26187551,
           26187848-26188454
          Length = 458

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 375 WSECNANGEMTRTDTLKANSDSSCEPSRRATKKCNKNKQVK 497
           + ECN    +  +DT  ANS++        TK C+K    K
Sbjct: 400 FKECNEAPTLCTSDTSNANSEADLSADELRTKICSKEMAAK 440


>11_08_0099 +
           28342765-28342872,28343016-28343167,28343461-28343705,
           28343790-28343921,28344047-28344973,28345057-28345187
          Length = 564

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 90  NTCSPCLNGIHVIGTLFGFMFI 25
           N C  C+NG  V+GT+    FI
Sbjct: 372 NPCPSCINGTRVVGTINNVTFI 393


>05_03_0174 + 9217679-9217799,9217981-9218180
          Length = 106

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +3

Query: 228 IRGAWSE-CDSKTNIKSRKLTLKKGDPANCDTVKTVQKKCKKACRY 362
           I G WS+   S+ NI     +    DP+N D    +    K AC Y
Sbjct: 47  ILGRWSKKASSEWNISGEPCSGVASDPSNWDNFPNINPLIKCACTY 92


>03_01_0652 +
           4771551-4771821,4771931-4772038,4772744-4773024,
           4773115-4773369,4773451-4773563,4773640-4773735,
           4773844-4773997,4774380-4774697
          Length = 531

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 312 CDTVKTVQKKCKKACRYEKSAWSECNANG 398
           C+TV+  + +   + R+  + WS CNA+G
Sbjct: 446 CNTVRGSESELINSGRWSTNLWSGCNASG 474


>01_01_0903 -
           7103091-7103120,7104092-7104651,7105208-7105328,
           7105545-7106567
          Length = 577

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 273 SRKLTLKKGDPANCDTVKTVQKKCKKACRYEKSAWSECNANGE 401
           +RKL++   D   C T  T+  K +K  R   ++ + C+  GE
Sbjct: 532 TRKLSIYTEDDDGCTTKDTLYMKLEKDLRCTDASINSCSGRGE 574


>02_01_0415 + 3037720-3039849
          Length = 709

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +1

Query: 46  GSYHVNTVK-TWRTGICCGLWQGFCC 120
           G  H N +  +WR GI C  W+G  C
Sbjct: 39  GLSHDNGIAMSWRNGIDCCAWEGITC 64


>06_02_0276 +
           13678457-13678734,13679592-13679931,13680025-13680243,
           13680328-13680420
          Length = 309

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 196 GVLKIEILAVT*GEPGANVILKRTSNPEN 282
           G   IEI+    G+PGAN++L +   P++
Sbjct: 118 GTQAIEIVMSVFGQPGANILLPKPGYPKH 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,028,327
Number of Sequences: 37544
Number of extensions: 205043
Number of successful extensions: 598
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)