Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A15
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14590.1 68416.m01847 C2 domain-containing protein low simila...    30   1.00 
At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type pept...    28   4.0  
At5g48540.1 68418.m06001 33 kDa secretory protein-related contai...    27   5.3  
At3g23110.1 68416.m02913 disease resistance family protein conta...    27   5.3  
At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family...    27   9.3  
At2g41260.2 68415.m05096 glycine-rich protein / late embryogenes...    27   9.3  
At2g41260.1 68415.m05095 glycine-rich protein / late embryogenes...    27   9.3  
At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to...    27   9.3  

>At3g14590.1 68416.m01847 C2 domain-containing protein low
           similarity to SP|Q16974 Calcium-dependent protein kinase
           C (EC 2.7.1.-) {Aplysia californica}; contains Pfam
           profile PF00168: C2 domain
          Length = 737

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
 Frame = +3

Query: 291 KKGDPANCDTVKTVQKKCKKACRYEKSAWSECNANGEMTRT----DTLKANSDSSCEPSR 458
           +K     C TV     +C      +KSA+S     G + R      T+KA  D +   S 
Sbjct: 631 RKSRDDECSTVSEQDSECLSETSDDKSAFSNVQDLGTLRRAKLEGKTVKAGEDDNVNTSA 690

Query: 459 RATKKCNKNKQVK 497
             +K  +KNK+ K
Sbjct: 691 N-SKDDSKNKETK 702


>At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type
           peptidyl-prolyl cis-trans isomerase, putative contains
           Pfam profile: PF00254, FKBP-type peptidyl-prolyl
           cis-trans isomerases
          Length = 694

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 261 TNIKSRKLTLKKGDPANCDTVKTVQKK 341
           T  K+RK TL+ G+PA C+  KT + K
Sbjct: 426 TRSKARKSTLESGEPAKCE--KTFEAK 450


>At5g48540.1 68418.m06001 33 kDa secretory protein-related contains
           Pfam PF01657: Domain of unknown function, duplicated in
           33 KDa secretory proteins
          Length = 263

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 351 ACRYEKSAWSECNANGEMTRTDTLKANSDS 440
           +CR   S W  CN N  ++ +  +  N DS
Sbjct: 17  SCRAADSIWQLCNTNSNISASSQVSKNIDS 46


>At3g23110.1 68416.m02913 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 835

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 46  GSYHVNTVKTWRTGICCGLWQGFCC 120
           GS+HV T+   +T  CC  W+G  C
Sbjct: 58  GSHHVTTLSWNKTVDCCS-WEGVTC 81


>At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family
           protein common family member:At2g33490 [Arabidopsis
           thaliana]
          Length = 608

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 222 RYIRGAWSECDSKTNIKSRKLTLKKGDP 305
           RY+     +CD K N+    L  +KG P
Sbjct: 129 RYVEDMKQQCDGKRNVYEMSLVKEKGRP 156


>At2g41260.2 68415.m05096 glycine-rich protein / late embryogenesis
           abundant protein (M17) identical to late-embryogenesis
           abundant M17 protein GI:3342551 from [Arabidopsis
           thaliana]
          Length = 280

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = +1

Query: 79  RTGICCGLWQGFC--CCRS 129
           R G C G W+G C  CCRS
Sbjct: 79  RWGCCGGWWRGRCRYCCRS 97



 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = +1

Query: 79  RTGICCGLWQGFC--CCRS 129
           R G C G W+G C  CCRS
Sbjct: 134 RWGCCGGWWRGRCRYCCRS 152



 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = +1

Query: 79  RTGICCGLWQGFC--CCRS 129
           R G C G W+G C  CCRS
Sbjct: 189 RWGCCGGWWRGRCRYCCRS 207



 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = +1

Query: 79  RTGICCGLWQGFC--CCRS 129
           R G C G W+G C  CCRS
Sbjct: 244 RWGCCGGWWRGRCRYCCRS 262


>At2g41260.1 68415.m05095 glycine-rich protein / late embryogenesis
           abundant protein (M17) identical to late-embryogenesis
           abundant M17 protein GI:3342551 from [Arabidopsis
           thaliana]
          Length = 225

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = +1

Query: 79  RTGICCGLWQGFC--CCRS 129
           R G C G W+G C  CCRS
Sbjct: 79  RWGCCGGWWRGRCRYCCRS 97



 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = +1

Query: 79  RTGICCGLWQGFC--CCRS 129
           R G C G W+G C  CCRS
Sbjct: 134 RWGCCGGWWRGRCRYCCRS 152



 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = +1

Query: 79  RTGICCGLWQGFC--CCRS 129
           R G C G W+G C  CCRS
Sbjct: 189 RWGCCGGWWRGRCRYCCRS 207


>At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to
           trithorax-like protein 1 GI:12659210 from [Arabidopsis
           thaliana]; characterized in Alvarez-Venegas R,et al,
           ATX-1, an Arabidopsis Homolog of Trithorax, Activates
           Flower Homeotic Genes.(Curr Biol. 2003 Apr
           15;13(8):627-37 PMID: 12699618); contains Pfam profiles
           PF00856: SET domain, PF00855: PWWP domain, PF00628,
           PHD-finger; identical to cDNA  trithorax-like protein 1
           (TRX1) GI:12659209
          Length = 1062

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 291 KKGDPANCDTVKTVQKKCK-KACRYEKSAWSECNANGEMTRTDTLKANSDSSCEPSRRAT 467
           K+    NC+ VK+  +    + C+ E +A+S    NG   R  +   N D +   SR A 
Sbjct: 133 KRRKIGNCELVKSGMESIGLRRCK-ENNAFSGNKQNGSSRRKGSSSKNQDKATLASRSAK 191

Query: 468 K 470
           K
Sbjct: 192 K 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,674,449
Number of Sequences: 28952
Number of extensions: 165558
Number of successful extensions: 396
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)