Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A14
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.17
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 30 0.23
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 27 1.2
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 1.6
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 27 2.1
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 26 2.8
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 26 2.8
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 26 2.8
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 2.8
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 26 2.8
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 26 3.7
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos... 26 3.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 4.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 4.9
SPBC30D10.04 |swi3||replication fork protection complex subunit ... 25 6.5
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 8.6
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 25 8.6
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 8.6
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 25 8.6
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 30.3 bits (65), Expect = 0.17
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 253 KKGYQSITGLYSDILREPIENKQLNITSNDELKEIRKYLEEVVMKQTRLAEE-NEALKQN 429
+K Q + + +E KQ + N+E++ ++K +E+ K TRLA NE +
Sbjct: 1365 EKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRLAAAWNEKCENL 1424
Query: 430 MMNMMTKIDELEGKIRNPESNKQST 504
+ +T+ L+ ++ N NK+ T
Sbjct: 1425 KKSSLTRFAHLKQELTN--KNKELT 1447
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.9 bits (64), Expect = 0.23
Identities = 15/69 (21%), Positives = 34/69 (49%)
Frame = +1
Query: 280 LYSDILREPIENKQLNITSNDELKEIRKYLEEVVMKQTRLAEENEALKQNMMNMMTKIDE 459
LY+++ E NKQ + S + L+E+++ + VV + + E + + + + +
Sbjct: 315 LYNNVTEELNNNKQQLLISENSLRELQEKYDSVVSELQVVKENKNTSVSAGVGLFSPLAQ 374
Query: 460 LEGKIRNPE 486
++NPE
Sbjct: 375 KLSAVQNPE 383
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 27.5 bits (58), Expect = 1.2
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +1
Query: 223 KIIDLCAWIGKK---GYQSITGLYSDILREPIENKQLNITSNDELKEIRKYLEEVVMKQT 393
+IIDL I K G +I SD+ + NK+L +EL +I+K+ ++ ++
Sbjct: 75 EIIDLKKCIAFKPIIGKNAIDNNISDLKKNLHSNKKLEAVLKEELHQIKKFSSDLQSLKS 134
Query: 394 RLAEENE 414
+ E +
Sbjct: 135 SMGERQK 141
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 1.6
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 337 NDELKEIRKYLEEVVMKQTRLAEENEALKQNMMNMMTKIDELEGKIRNPESN 492
NDEL E+ + EEV+ +Q +L A K+ + M + K R+ E N
Sbjct: 129 NDELNELGENEEEVLTEQKQLDPTLAAKKELDLQMDAVLKPTRTKKRSNEDN 180
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 358 RKYLEEVVMKQTRLAEENEALKQNMMNMMTKIDE 459
+K+LEE ++++T E L NM+T + E
Sbjct: 234 KKHLEEAILEETSHLSFKEVLSSTTANMITPLAE 267
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 310 ENKQLNITSNDELKEIRKYLEEVVMKQTRLAEENEALKQNMMNM 441
++KQ+ DEL E+R Y+ K+ A + E ++QN N+
Sbjct: 154 DDKQIPSAQVDELVEMRLYVPGTTAKED--AADGEEVEQNAANL 195
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 26.2 bits (55), Expect = 2.8
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 283 YSDILREPIE---NKQLNITSNDELKEIRKYLEEVVMKQTRLAEENEALKQNMMNMMTKI 453
YSD++R+ ++ +K + E +Y E + ++Q E +MMN+ I
Sbjct: 104 YSDLIRDYVDYLLDKLSFHAQHPEFNGTFEYKEYISLRQVDDPNEGYETVYDMMNLQDHI 163
Query: 454 DELEGKI 474
DE + ++
Sbjct: 164 DEFQKQL 170
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +1
Query: 313 NKQLNITSNDELKEIRKYLEEVVMKQTRLAEENEALKQNMMNMMTKIDELEGK 471
+ Q++ ND K +RK L V+K LAEE + ++ + ++ ++ + + K
Sbjct: 66 SNQVSQNDNDARKNLRKRLRNDVLKD--LAEEIQGCEKKLESLYEEVAKAKAK 116
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 343 ELKEIRKYLEEVVMKQTRLAEENEALKQNMMNMMTKIDEL 462
EL + LEE K R+ ++N + + ++ TK DEL
Sbjct: 1749 ELNGFKVQLEEEREKNLRIRQDNRHMHAEIGDIRTKFDEL 1788
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 26.2 bits (55), Expect = 2.8
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 253 KKGYQSITGLYSDILREPIENKQLNITSNDELK-EIRKYLEEVVMKQTRLAEENEALKQN 429
KKG + G + L E + K ++T+N+ LK EI+K +K+ + +
Sbjct: 29 KKGERKNVGDKGEKLNEKVLKKAKSVTTNNSLKSEIKKEKSVPSIKEKNKGDAKHTKLTS 88
Query: 430 MMNMMTKIDELEG 468
+ M D+L+G
Sbjct: 89 LQQKMK--DKLDG 99
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 3.7
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = +1
Query: 298 REPIENKQLNI-----TSNDELKEIRKYLEEVVMKQTRLAEEN 411
R+PIE + +I + +ELK I K + +V ++ R+AEE+
Sbjct: 331 RDPIEGLKKHIMEWGVANANELKNIEKRIRGMVDEEVRIAEES 373
>SPAC664.07c |rad9||checkpoint clamp complex protein
Rad9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 3.7
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 253 KKGYQSITGLYSDILREPIENKQLNITSNDELKEIRKYL-EEVVMKQTRLAEE 408
K GY S + D++ +EN Q++I++ E + I K+L + V+K +++ E
Sbjct: 108 KNGYGSESASRKDVI---VENVQISISTGSECRIIFKFLCKHGVIKTYKISYE 157
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 188 LSFRGVLPVNMNHSISFNTAVSNEQPISTSNL 93
+SF P N + I+ TAV++ PI++S++
Sbjct: 358 ISFANTTPENTSTQITSPTAVNSSTPITSSSV 389
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 340 DELKEIRKYLEEVVMKQTRLAEENEALKQNMMNMMTK 450
DE + LEE+ K +L EEN +K ++ + K
Sbjct: 1088 DEKDQRNVELEELTSKYGKLGEENAQIKDELLALRKK 1124
>SPBC30D10.04 |swi3||replication fork protection complex subunit
Swi3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.0 bits (52), Expect = 6.5
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Frame = +1
Query: 310 ENKQLNITSNDELKEIRKYLEE----VVMKQTRLA--EENEALKQN----MMNMMTKIDE 459
ENK+ + N+E KE LEE V + RLA +E + +N + MM K+ +
Sbjct: 16 ENKREEVKKNEEEKEFDLGLEENPDSVKKPRKRLAKFDEERLISENGIPKLRKMMRKV-K 74
Query: 460 LEGKIRNPESNKQ 498
L+GK + KQ
Sbjct: 75 LKGKGHEAKDLKQ 87
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 24.6 bits (51), Expect = 8.6
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +1
Query: 289 DILREPIENKQLNITSNDELKEIRKYLEEVVMKQTRLAEENEALKQNMMNMMTKIDEL 462
DI + N++L + E +KY +EV+ R+AEE Q + + + +E+
Sbjct: 653 DIAEQSSANRELAARRRQLISEWQKYRDEVI---ARVAEERAITGQPAITVPAEEEEI 707
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 260 PFLPIHAQRSIIFHDFVLGVR 198
P + I R IIF+DF++G+R
Sbjct: 391 PNILIDVHRYIIFNDFLIGLR 411
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 423 LKCFVLFCQSRLFHDYFFQIFPDFFQLIVRCNI 325
LKC + SR+F + + PD + L + NI
Sbjct: 394 LKCVTIL--SRMFKQRNYDVLPDVYDLFLSVNI 424
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 397 LAEENEALKQNMMNMMTKIDELEGKIRNPE 486
L ALK N + K+D+L + NPE
Sbjct: 290 LRHRGYALKPNEEELRKKLDDLTKSLNNPE 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,603
Number of Sequences: 5004
Number of extensions: 48667
Number of successful extensions: 188
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -