Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A13
(567 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 48 4e-06
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 39 0.002
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0) 31 0.66
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38) 28 6.1
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 28 6.1
SB_3622| Best HMM Match : K167R (HMM E-Value=1.5) 28 6.1
SB_16588| Best HMM Match : Tropomyosin (HMM E-Value=3.3) 28 6.1
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 27 8.1
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 53.6 bits (123), Expect = 1e-07
Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 7/189 (3%)
Frame = +2
Query: 2 LAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFWHSIKKTFGTTPVDDKESEHREGFTALVR 181
L+++Y FDG DL W+ P + G +P DK+ FT L
Sbjct: 507 LSDKYDFDGFDLDWEYPASR-------------------GNSPPQDKQH-----FTILCE 542
Query: 182 EM------KQALNVKPNMQLVISVLPNVNS-SIYFDVPSIINLVDIVNIQAFDYYTPERN 340
EM K A KP M L +V + ++V + ++D +N+ +D + P
Sbjct: 543 EMLDAFKRKAADTDKPRMLLTAAVSAGHGTVDAAYEVHKLAGILDWINLMTYDLHGPWE- 601
Query: 341 PKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISG 520
P +TA + P ++ A+ YW++ G P K+ LG++ G ++L ++ +
Sbjct: 602 PYTGHHTALVGPPGDK---LTVSYAVKYWMEKGMPCGKIALGMANYGHAFELSDPTKTAL 658
Query: 521 VPPIHADXG 547
P + + G
Sbjct: 659 GAPANVNKG 667
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 48.4 bits (110), Expect = 4e-06
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 7/172 (4%)
Frame = +2
Query: 2 LAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFWHSIKKTFGTTPVDDKESEHREGFTALVR 181
+ Q+ FDG DL W+ P + G+ P D ++ FT L +
Sbjct: 238 MLRQWNFDGFDLDWEYPGNR------------------VGSDPGD------KQRFTILCQ 273
Query: 182 EMKQALNV------KPNMQLVISVLPN-VNSSIYFDVPSIINLVDIVNIQAFDYYTPERN 340
E+ A + +P + L +V ++V I ++D++N+ A+D
Sbjct: 274 ELLDAFKLEAAQTNRPRLLLTAAVAAGKATIDKAYEVDKIGQILDLINLMAYDL-RGMWE 332
Query: 341 PKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKL 496
P+ +TA + P + A YWI GAP K+ LG+ T GR +KL
Sbjct: 333 PETGHHTA-LEGPPGEE--LTVSFAAQYWIDKGAPASKIALGLGTYGRAFKL 381
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 39.1 bits (87), Expect = 0.002
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 12/174 (6%)
Frame = +2
Query: 17 GFDGIDLSWQLPKRKPKKIRSSIGSFWHSIKKTFGTTPVDDKESEHREGFTALVREMKQA 196
GFDG+DL W+ P + +S G F + E R+ F A ++
Sbjct: 519 GFDGLDLDWEYPGMRGGSPKSDKGRFTLLCQ-------------ELRDAFEAEAKD---- 561
Query: 197 LNVKPNMQLVISVLPNV-NSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIY 373
+ K + L +V + +D+ I +D +N+ +D + PK +TA
Sbjct: 562 -SGKERLLLTAAVAAGLWTIKDAYDIEGISKPLDWINVMTYDLHGTWE-PKTGHHTA--M 617
Query: 374 APQNRDPLQNADAAINYW-----------IQNGAPTHKLVLGISTTGRTWKLDS 502
P D L AI YW I+NG P +K+VLG+ T GR + L+S
Sbjct: 618 GPDG-DKL-TLPFAIWYWMNNRDTWEKPGIRNGMPANKIVLGLGTYGRAFGLES 669
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 14 YGFDGIDLSWQLPKRKPKKIRSSIGSF 94
+GFDG+DL W+ P + +S G F
Sbjct: 133 HGFDGLDLDWEYPGMRGGSPKSDKGRF 159
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 36.7 bits (81), Expect = 0.013
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
Frame = +2
Query: 143 ESEHREGFTALVREMKQALNV------KPNMQLVISVLPNVNS-SIYFDVPSIINLVDIV 301
E +HR FT L +E+ A KP + L +V + +++ ++ +D +
Sbjct: 150 EDKHR--FTLLCQELLAAFETEAANTGKPRLLLTAAVSAGETTVKNGYEISALGQALDWI 207
Query: 302 NIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTG 481
N+ ++D + + + A + + DPL A++ WI G P++K+ LGI G
Sbjct: 208 NLMSYDLHGDWEDT--TGHHAAMDSSTG-DPL-TVTHAVDLWIAGGMPSNKIALGIPLYG 263
Query: 482 RTWKLDSDSEISGVPPIHADXG 547
R++ L + ++ P G
Sbjct: 264 RSFTLKTANKTLDAPATKGGQG 285
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +2
Query: 131 VDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSI 280
+DDK++E +E FT V + + PN ++VI++L N + SI F V S+
Sbjct: 703 LDDKKNEPQETFTVTVSSADSNIEISPN-EVVITILDN-DVSIGFMVTSV 750
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 131 VDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSI 280
+DDKE E E FT + + +NVKP + + N ++SI F++ ++
Sbjct: 2157 IDDKEIEDLEAFTVTLSSDDKRVNVKPETG-TVKITDN-DASIGFELATV 2204
>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 902
Score = 31.5 bits (68), Expect = 0.50
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = -1
Query: 252 LFTFGKTLITNCILGFTLSACFISRTRAVKPSLCSDSLS---STGVVP-NVFLMLCQKDP 85
++TFG + +C G+T C I++ + V PSL + + T VP + ++ C K
Sbjct: 290 IYTFGNETVCDCNPGYTGQRCTINK-QCVVPSLNTGEIGGKYETERVPGSKMVLFCNKG- 347
Query: 84 ILERIFFGFLFGNCQDRSIPSKPYCS 7
I + FG C D S S PY S
Sbjct: 348 ----ISLSWRFGVCVDGS--SSPYWS 367
>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
Length = 1958
Score = 31.1 bits (67), Expect = 0.66
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 110 KTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSI 280
K F +DD E+ E F + + V P++ V V+ + ++ I FDVPSI
Sbjct: 950 KDFVIALIDDDVVENPEKFAVVFSTDDPRVTVDPSIPFVTVVITDNDAMIGFDVPSI 1006
>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
Length = 1301
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 128 PVDDKESEHREGFTALVREM 187
P DDK +E R FT+L++EM
Sbjct: 1066 PEDDKPAEQRMSFTSLLKEM 1085
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 104 IKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIY 262
+KK F + V EH+ GF + A + K +++LV S P + +SIY
Sbjct: 306 LKKPFKQSEVVKNTKEHQNGFPFVAATTSGAAHWKTSVELVNS--PALGTSIY 356
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 427 DSKWCAYPQTCPWYQHHWTYVEA 495
D + C+YP T PW WT + +
Sbjct: 80 DERNCSYPTTGPWTTRPWTPISS 102
>SB_3622| Best HMM Match : K167R (HMM E-Value=1.5)
Length = 441
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -3
Query: 361 SVVRLFGVTFRCII--VKCLDVDNVDQVYDAWDVKVNGAIYVWQNADN*LHIGFYIECLF 188
SV F T + +I + C DV+ V + + V VNG QNA+ + + F + F
Sbjct: 252 SVENRFSGTNKALIDAIVCQDVEEVKSILETEAVNVNG-----QNAEGFVPLEFAVMLGF 306
Query: 187 HLTYKSGEAF 158
H K +AF
Sbjct: 307 HHIAKMLQAF 316
>SB_16588| Best HMM Match : Tropomyosin (HMM E-Value=3.3)
Length = 430
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 370 LRTAEPRSSTKRRRCYKLLD-SKWCAYPQTCPWYQHHWTYVEAR 498
LR + PRS ++ + K+ ++P P +HHWT E R
Sbjct: 26 LRNSTPRSKARKPLQFTSPSHGKFKSFPVKSPVRRHHWTLEEER 69
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 400 KRRRCYKLLDSKWCAYPQTCP 462
K RCY L DSK C P P
Sbjct: 327 KAPRCYNLCDSKTCIIPTKAP 347
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,667,017
Number of Sequences: 59808
Number of extensions: 370659
Number of successful extensions: 1081
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -