Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A12
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    28   0.62 
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    27   1.4  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    25   5.8  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   5.8  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    25   7.7  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   7.7  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
 Frame = +3

Query: 141 LPSPAEFICTLWIPQAKYA-VRKEAIYYPGPISTTPEMPT-AADMQLAAAVGSKGNQLVP 314
           L  P+  I TL +P  +   +  + IY+    +  P  PT +  ++L   V       VP
Sbjct: 484 LAVPSVLIFTLALPVYQCPRLAVDPIYHMDVSNCNPSKPTWSRKLRLLQCV------FVP 537

Query: 315 EANVTISKXNFKKVSGQNNISIXHL*STFN-MCVTCLYVYADK 440
            A VT S      ++G N + I    S F+ +C+T LY Y D+
Sbjct: 538 FAFVTFS------ITGGNRLYIYAASSVFSILCITALYYYTDE 574


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -1

Query: 269 HISCRRHFRRCTNRSWIVNGFFPNGIFGLWYPER 168
           H +    F  C N  W+V     + I  +W P R
Sbjct: 381 HTNRISEFSWCPNERWVVGSLADDNILQIWSPSR 414


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -1

Query: 269 HISCRRHFRRCTNRSWIVNGFFPNGIFGLWYPERA 165
           H SC      C N +W +     + I  +W P R+
Sbjct: 381 HTSCTIDMDWCPNYNWTMATAAEDNILQIWTPSRS 415


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 102 ICHPPASNYAKRRPAV 55
           + HPP SN + R PAV
Sbjct: 285 VMHPPVSNLSPRTPAV 300


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 240 TPEMPTAADMQLAAAVGSKGNQLVPEANVTISKXNF 347
           TPE     DM+LA +     + +  EAN  I +  +
Sbjct: 127 TPETKVYVDMRLARSKRFSAHNIAKEANTDIDRIKY 162


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 21  PAPNLTLATPERRLDGVSHNLK 86
           P PN  + TP+++LD VS + +
Sbjct: 231 PNPNSDIVTPDKQLDVVSEHAR 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,238
Number of Sequences: 5004
Number of extensions: 40842
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)