Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A12
(470 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0519 + 3758919-3759090,3759673-3759833,3760633-3760666,376... 29 1.4
07_01_0253 + 1888831-1889399,1890121-1890526,1890980-1891195,189... 29 1.9
04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029 29 1.9
11_06_0024 - 19331250-19331380,19331412-19331484,19331571-193317... 28 4.4
08_01_0275 + 2249794-2251338 28 4.4
05_01_0589 - 5281105-5281434,5281532-5281613,5281833-5281963,528... 28 4.4
02_05_0579 + 30114127-30114177,30114691-30115386,30115883-301160... 28 4.4
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 4.4
11_03_0167 - 11095491-11095811 27 7.6
03_06_0407 - 33714563-33714636,33714966-33715152,33715943-337160... 27 7.6
02_02_0296 + 8678488-8679798 27 7.6
>06_01_0519 +
3758919-3759090,3759673-3759833,3760633-3760666,
3760767-3760860,3761305-3761308
Length = 154
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 140 IGIVEGNGCYRGISAIHQLQIMRNAVQPSFRCGQRKVRRG 21
I ++E +G Y G S H+ + + P+ RC KVRRG
Sbjct: 112 IDVLEVDGVYYGFSGCHRYEAHQRLGLPTIRC---KVRRG 148
>07_01_0253 +
1888831-1889399,1890121-1890526,1890980-1891195,
1891441-1891548,1892085-1892359,1892462-1892714
Length = 608
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 123 TLNDADLPSPAEFICTLWIPQAKYAVRKEAIY-YPGPISTTPEMPTAADMQLAAA 284
T + +LP PA T + + ++ Y +PG + ++P +P AD LAAA
Sbjct: 46 TTHYPNLPPPAPPPSTSLVAAEEASLAPRRTYRFPGSVPSSPTLPDTADGGLAAA 100
>04_04_1396 + 33227126-33227846,33228530-33228637,33228825-33230029
Length = 677
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 92 GWQIFRG-SNRYPQRCRFTIACGIHLHALDTTSQICR 199
GWQ F G S RCR ++ G+H + + TS I R
Sbjct: 94 GWQNFAGPSCSGIARCRTSVGRGVHSYTIQVTSLIDR 130
>11_06_0024 -
19331250-19331380,19331412-19331484,19331571-19331768,
19333317-19333484,19334187-19334263,19335321-19335423
Length = 249
Score = 27.9 bits (59), Expect = 4.4
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +3
Query: 12 GVYPAPNLTLATPERRLDGVSHNLKLVDGRYSAV--ATVTLNDADLPSPAEFICTLWIPQ 185
GV PAP+ LAT + L G +A+ T+++ P P +F+ +W+ +
Sbjct: 7 GVPPAPSPALATIDYSLTYNEIAASGAPGSVNAIFWCTISMLKTTFPDPFQFLHVIWLKE 66
Query: 186 -AKYAVRKEAI 215
K+ + AI
Sbjct: 67 FQKFDDKSSAI 77
>08_01_0275 + 2249794-2251338
Length = 514
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/89 (23%), Positives = 34/89 (38%)
Frame = -2
Query: 289 PTAAASCISAAVGISGVVLIGPG**MASFLTAYLACGIQSVQMNSAGDGKSASLRVTVAT 110
PT+ + G G V++G + + L + S DG + R+ V
Sbjct: 153 PTSFMNRTGEGRGTGGGVILGT---TSEAMLVTLVAARDAALRRSGSDGVAGLHRLAVYA 209
Query: 109 AEYLPSTSFKLCETPSSRLSGVASVRLGA 23
A+ ST FK C + + S+ GA
Sbjct: 210 ADQTHSTFFKACRLAGFDPANIRSIPTGA 238
>05_01_0589 -
5281105-5281434,5281532-5281613,5281833-5281963,
5282029-5282169,5282274-5282429,5282522-5282596,
5282777-5282956,5283097-5283247,5283526-5283612,
5284239-5284349,5284447-5284634
Length = 543
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 118 VATAEYLPSTSFKLCETPSSRLSGVASVRLG 26
VA AE + + + C TP++RL GVA+ G
Sbjct: 6 VAAAEQVVAALREECATPAARLDGVAAAMAG 36
>02_05_0579 +
30114127-30114177,30114691-30115386,30115883-30116083,
30116354-30116658,30116944-30117073
Length = 460
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +3
Query: 228 PISTTPEMPTAADMQLAAAVGSKGNQLVPEANVTISKXNFKKVSGQNNISIXHL 389
P+STTP+ P D + G+ V +A++T N++++ G +++ L
Sbjct: 243 PVSTTPKAPCVTDKDMFNDGSVYGDFCVDDADLTFE--NYEELFGTSHVQTEQL 294
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 121 TVATAEYLPSTSFKLCETPSSRLSGVASVRLGAGYTPS 8
T + Y PST C P S SG + G GY+PS
Sbjct: 400 TPGSGGYSPSTP---CSAPPSPSSGTSPTTPGGGYSPS 434
>11_03_0167 - 11095491-11095811
Length = 106
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 36 TLATPERRLDGVSHNLKLVDGRYSAVATVTLNDADLPSPA 155
TL RRL+ V HN +++G S + T +D D+ +PA
Sbjct: 45 TLGHLLRRLEAVHHNKVMIEG--SDKVSTTEDDGDVVAPA 82
>03_06_0407 -
33714563-33714636,33714966-33715152,33715943-33716093,
33716520-33716632,33717022-33717085,33717180-33717391,
33717540-33717621,33717811-33717866,33718004-33718072,
33718524-33718772,33718873-33719049,33719556-33719702,
33719794-33719926,33720093-33720307
Length = 642
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 75 HNLKLVDGRYSAVATVTLNDADLPSPAEFICTLWIPQAKYAVRKEAIYYPG 227
H KL+ +A A V D P+ E + T W+P+ + K + G
Sbjct: 75 HRAKLIAECQAADAVVLTYACDRPATLERLSTFWLPELRRLQLKAPVIVVG 125
>02_02_0296 + 8678488-8679798
Length = 436
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 9 EGVYPAPNLTLATPERRLDGVSHNLKLV 92
EG P P+ LAT R +G S L LV
Sbjct: 219 EGFVPKPHAPLATAPSRQEGASRRLPLV 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,422,274
Number of Sequences: 37544
Number of extensions: 296672
Number of successful extensions: 803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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