Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A12
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U29244-9|AAN60507.1|  681|Caenorhabditis elegans Eps15 (endocyto...    29   2.2  
U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocyto...    29   2.2  
L16559-6|AAA27931.1|  397|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.      29   2.2  
Z83225-2|CAB05722.1|  732|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z81097-19|CAB03177.1|  732|Caenorhabditis elegans Hypothetical p...    27   6.8  
Z50027-7|CAA90332.3|  460|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z50027-6|CAO82026.1|  564|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical pr...    27   9.0  
L15314-3|AAF99986.2|  393|Caenorhabditis elegans Gtp exchange fa...    27   9.0  
AJ236896-1|CAB38534.1|  377|Caenorhabditis elegans GRP1 protein ...    27   9.0  

>Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical
           protein C01G6.5 protein.
          Length = 952

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +3

Query: 27  PNLTLATPERRLDGVSHNLKLVDGRYSAVATVTLNDADLPSPAEFICTLWIPQAKYAVRK 206
           P+ T    ++  D  +   ++ + R S+ ++ T  D  +PS +++ C+  IP+ K   RK
Sbjct: 179 PSTTNKVLQQEADSTNGGPEMENNRASSASSATPEDTQMPSTSQYFCS--IPK-KTPFRK 235

Query: 207 E 209
           E
Sbjct: 236 E 236


>U29244-9|AAN60507.1|  681|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform b
           protein.
          Length = 681

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +3

Query: 150 PAEFICTLWIPQAKYAVRKEAIYYPGPISTTPEMPTAADMQLAAAVGSKGNQL 308
           P+E    L  P  +      A+++P    +TP++P A  M++  A+  +  ++
Sbjct: 369 PSELPLHLIPPSFRPPTEPSALHHPAQSVSTPQLPEATSMEIKEALEGENEEM 421


>U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform a
           protein.
          Length = 751

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +3

Query: 150 PAEFICTLWIPQAKYAVRKEAIYYPGPISTTPEMPTAADMQLAAAVGSKGNQL 308
           P+E    L  P  +      A+++P    +TP++P A  M++  A+  +  ++
Sbjct: 369 PSELPLHLIPPSFRPPTEPSALHHPAQSVSTPQLPEATSMEIKEALEGENEEM 421


>L16559-6|AAA27931.1|  397|Caenorhabditis elegans Hypothetical
           protein C06E1.8 protein.
          Length = 397

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +1

Query: 91  WMADIPR*QPLPSTMPIYHRLRNSSARSGYHKPNMPLGKKPFTIQDLLVQRLKCLRQLIC 270
           W+A++P+  P+P+T PI+        +    KP++   + P          L    QL C
Sbjct: 205 WLANLPK--PIPTTAPIFVADSKEKIKDEVEKPDVYTSQSPTCSSVSFKSDLSAFHQL-C 261

Query: 271 SSQRQLVQKVI 303
           S +  +   +I
Sbjct: 262 SDRALISSPLI 272


>AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +3

Query: 150 PAEFICTLWIPQAKYAVRKEAIYYPGPISTTPEMPTAADMQLAAAVGSKGNQL 308
           P+E    L  P  +      A+++P    +TP++P A  M++  A+  +  ++
Sbjct: 414 PSELPLHLIPPSFRPPTEPSALHHPAQSVSTPQLPEATSMEIKEALEGENEEM 466


>Z83225-2|CAB05722.1|  732|Caenorhabditis elegans Hypothetical
           protein F42H11.2 protein.
          Length = 732

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 71  NAVQPSFRCGQRKVRRGIHSFRR 3
           N +  S+RC ++K+R   H+ RR
Sbjct: 169 NVLTNSYRCAKKKIRATFHAIRR 191


>Z81097-19|CAB03177.1|  732|Caenorhabditis elegans Hypothetical
           protein F42H11.2 protein.
          Length = 732

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 71  NAVQPSFRCGQRKVRRGIHSFRR 3
           N +  S+RC ++K+R   H+ RR
Sbjct: 169 NVLTNSYRCAKKKIRATFHAIRR 191


>Z50027-7|CAA90332.3|  460|Caenorhabditis elegans Hypothetical
           protein C39B10.2a protein.
          Length = 460

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 110 GSNRYPQRCRFTIACGIHLHALDTTSQIC 196
           G+  Y  RC  T+AC ++L       Q+C
Sbjct: 137 GTVAYSCRCTLTVACSLNLRYYPMDQQLC 165


>Z50027-6|CAO82026.1|  564|Caenorhabditis elegans Hypothetical
           protein C39B10.2b protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 110 GSNRYPQRCRFTIACGIHLHALDTTSQIC 196
           G+  Y  RC  T+AC ++L       Q+C
Sbjct: 137 GTVAYSCRCTLTVACSLNLRYYPMDQQLC 165


>U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical
           protein F45F2.7 protein.
          Length = 623

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 169 RSGYHKPNMPLGKKPFTIQDLLVQRLKCLRQLICSSQRQLVQKVIS*FP-RQTLLFL 336
           R+G H PN+P+    F I  +++Q +     LI S  R L +      P +QTL FL
Sbjct: 486 RTGSHVPNLPIAVFTFRIIQVIIQAMYI---LIASRLRCLSEVNARTQPGKQTLTFL 539


>L15314-3|AAF99986.2|  393|Caenorhabditis elegans Gtp exchange
           factor for arfs protein1 protein.
          Length = 393

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 84  KLVDGRYSAVATVTLNDADLPSPAEFICTLWIPQAKYAVRKEAIY 218
           +LV+GR+S      +ND D+ S    I  +  PQ     R ++ +
Sbjct: 349 RLVEGRHSIYKICAVNDEDMRSWINAISRMMAPQQHLLARPKSTH 393


>AJ236896-1|CAB38534.1|  377|Caenorhabditis elegans GRP1 protein
           protein.
          Length = 377

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 84  KLVDGRYSAVATVTLNDADLPSPAEFICTLWIPQAKYAVRKEAIY 218
           +LV+GR+S      +ND D+ S    I  +  PQ     R ++ +
Sbjct: 333 RLVEGRHSIYKICAVNDEDMRSWINAISRMMAPQQHLLARPKSTH 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,149,028
Number of Sequences: 27780
Number of extensions: 239970
Number of successful extensions: 562
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)