Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A11
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    25   2.2  
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    23   8.8  
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa...    23   8.8  

>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 22  LHKAKIINFPEWPETLLLMNPNSRGS 99
           L KA+     E+P T LL NP+S GS
Sbjct: 97  LEKAQAATDLEYPVTKLLWNPSSVGS 122


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 109 KYLESPLNWDSSTEESPAIL 50
           KYL+S L++   TE+S ++L
Sbjct: 139 KYLQSALSYTQPTEDSSSLL 158


>SPBC337.15c |coq7||ubiquinone biosynthesis protein
           Coq7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 63  LRPFWEINNFSL 28
           LRPFW+I  F+L
Sbjct: 107 LRPFWDIAGFAL 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,191,501
Number of Sequences: 5004
Number of extensions: 18939
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)