Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A11
         (327 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0427 - 20674017-20674064,20674833-20674934,20675391-206755...    29   0.86 
03_06_0617 - 35124114-35124148,35124243-35124335,35124415-351249...    27   2.6  
02_02_0263 - 8400488-8400913,8401011-8401481,8401581-8401843,840...    26   6.1  
11_01_0752 - 6327269-6327764,6328571-6328839                           26   8.0  
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700...    26   8.0  
07_03_0824 + 21769569-21769689,21770891-21770959,21771047-217711...    26   8.0  
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713...    26   8.0  
02_05_0201 + 26687369-26689228                                         26   8.0  

>06_03_0427 -
           20674017-20674064,20674833-20674934,20675391-20675515,
           20675812-20675866
          Length = 109

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 247 CHGYFNFPCISYSVYIKIM 303
           CHG+F  PCIS+ ++  I+
Sbjct: 70  CHGHFTVPCISFVLFRSIL 88


>03_06_0617 -
           35124114-35124148,35124243-35124335,35124415-35124919,
           35125039-35125238,35125514-35125604,35125699-35126769
          Length = 664

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 51  RMAGDSSVDESQFKGLSKYFNSQTNRGRANTAK 149
           R +GDS+++ESQ + L K  +  ++ G+  T+K
Sbjct: 569 RTSGDSTIEESQKQKLQKNKSKASSGGQKKTSK 601


>02_02_0263 -
           8400488-8400913,8401011-8401481,8401581-8401843,
           8401964-8402225
          Length = 473

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 87  IGIHQQKSLRPFWEINNFSLM 25
           + ++Q   L PFW +N  SLM
Sbjct: 328 VNLYQNAILTPFWNVNAHSLM 348


>11_01_0752 - 6327269-6327764,6328571-6328839
          Length = 254

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 58  PETLLLMNPNSRGSPNTLTAKRTEAELTRPR-RPMQS 165
           P T    + +  G P+  T+K TE E T  R RP QS
Sbjct: 28  PSTSSTSDADGGGKPSPRTSKPTEGESTTRRCRPTQS 64


>10_03_0010 +
           7007694-7007888,7007994-7008059,7008161-7008334,
           7009232-7009306,7009384-7009510,7012280-7012371,
           7012496-7012566,7012683-7012792,7013016-7013053,
           7013825-7013960,7014382-7014456,7014574-7014697,
           7014917-7015013,7015426-7015451,7016180-7016255,
           7016499-7016636,7016735-7016872
          Length = 585

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = -2

Query: 203 FWSKSEIQDQCTADCIGRLGRVSSASVRLAVKV--FGEPLELGFIN--RRVSGHSGKLII 36
           F    E  DQCT +   +LGR       ++     F  P    F++     +  +GK +I
Sbjct: 131 FADTKERTDQCTVNVEVKLGRNDDIEFAVSPDALRFTTPKFSDFVSSDEMETFENGKEVI 190

Query: 35  LALCNLHTA 9
           L  CN  TA
Sbjct: 191 LDYCNFRTA 199


>07_03_0824 +
           21769569-21769689,21770891-21770959,21771047-21771153,
           21771310-21771414
          Length = 133

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 185 IQDQCTADCIGRLG-RVSSASVRLAVKVFGEPLELGFINRRVSGHS 51
           + D C    +  L  R +S  +R A   FG+ +E   I  R+SG+S
Sbjct: 30  LADPCNNLFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYS 75


>06_01_0926 -
           7139220-7139318,7139394-7139478,7139573-7139643,
           7139996-7140076,7140805-7140895,7141242-7141330,
           7141749-7141802,7141906-7142085,7142175-7142237,
           7142575-7142705,7142807-7142900,7143343-7143684,
           7143957-7144348,7145010-7148487,7149101-7149187,
           7149324-7149367,7149495-7149591,7150429-7150572
          Length = 1873

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 79  NPNSRGSPNTLTAKRTEAELTRPRRPMQSAV 171
           NP   G  + LT K  E+ELT P +P Q  +
Sbjct: 200 NPGGPGQGDGLTEKPLESELT-PEKPSQDDI 229


>02_05_0201 + 26687369-26689228
          Length = 619

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 94  GSPNTLTAKRTEAELTRPRRP 156
           GSP T T KR  A  T P RP
Sbjct: 94  GSPTTTTTKRMYALRTNPGRP 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,421,691
Number of Sequences: 37544
Number of extensions: 115965
Number of successful extensions: 258
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)