Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A11
         (327 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.3  
SB_9616| Best HMM Match : PTS_IIB_fruc (HMM E-Value=2.3)               26   6.3  
SB_39250| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)                 26   8.3  
SB_20715| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_8472| Best HMM Match : TatC (HMM E-Value=1.4)                       26   8.3  

>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
 Frame = +3

Query: 78  ESQFKGLSKYFNSQTN------RGRANTAKATYAVCGALILYF-TLRPKKS 209
           E  FK L K+F +  N         AN   +TYAV G   +YF T + KK+
Sbjct: 560 EPTFKKLGKHFRNDKNIVIAKIDATANDVPSTYAVEGFPTIYFATSKDKKN 610


>SB_9616| Best HMM Match : PTS_IIB_fruc (HMM E-Value=2.3)
          Length = 462

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 106 YLESPLNWDSSTEESPAILGN 44
           +LE+P N+ S TE+   +LGN
Sbjct: 393 FLETPSNFSSMTEDQLLVLGN 413


>SB_39250| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
          Length = 468

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 137 SSASVRLAVKVFGEPLELGFINRRVSGHSG 48
           +S  V + +K+FG+  ELG +  R +G  G
Sbjct: 45  ASTDVPIYIKLFGDDGELGELTFRTAGQKG 74


>SB_20715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +1

Query: 22  LHKAKIINFPEWPETLL-LMNPNSR 93
           +HKA I N P+ P++L  L +PNS+
Sbjct: 244 IHKAPIPNIPKLPKSLRELYSPNSK 268


>SB_8472| Best HMM Match : TatC (HMM E-Value=1.4)
          Length = 476

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 167 ADCIGRLGRVSSASVRLA 114
           ADC+G +G V  ASV LA
Sbjct: 236 ADCLGEIGPVDLASVALA 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,815,076
Number of Sequences: 59808
Number of extensions: 138300
Number of successful extensions: 269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)