Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A11
(327 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 28 1.3
At1g67140.1 68414.m07638 expressed protein 27 3.0
At3g09710.1 68416.m01150 calmodulin-binding family protein low s... 26 5.2
At1g51850.1 68414.m05845 leucine-rich repeat protein kinase, put... 26 5.2
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 26 6.8
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 25 9.0
At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein ... 25 9.0
At5g39420.1 68418.m04775 protein kinase family protein contains ... 25 9.0
At3g45790.1 68416.m04955 protein kinase-related contains eukaryo... 25 9.0
At1g77460.1 68414.m09020 C2 domain-containing protein / armadill... 25 9.0
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 82 PNSRGSPNTLTAKRTEAELTRPRRPM 159
P S+G+PN+L A + RP PM
Sbjct: 27 PGSQGNPNSLAANMQNLNINRPPPPM 52
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 51 RMAGDSSVDESQFKGLSKY 107
+ +GDSS++ES F+GL Y
Sbjct: 1377 KSSGDSSINESSFQGLKLY 1395
>At3g09710.1 68416.m01150 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 454
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 85 NSRGSPNTLTAKRTEAELTRPRRPMQSAVH*SCISLLDQKSQRNK 219
NS PNT +A T R +RP+ S++ + S+RN+
Sbjct: 312 NSSTKPNTPSASSTATRNPRKKRPIPSSIKSKSSDDEAKSSERNR 356
>At1g51850.1 68414.m05845 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 865
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 168 GALILYFTLRPKKSTK 215
GAL+L+F LR KKS K
Sbjct: 502 GALVLFFILRKKKSPK 517
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 46 FPEWPETLLLMNPNSRGSPNTLTAKRTEAELTRPRRPMQSA 168
FP PET + + RG+ + A+R E + P M SA
Sbjct: 481 FPRSPETSSMGSVAFRGASGNMNAQRNLRETSSPNFKMLSA 521
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 4 HCAVCKLHKAKIINF-PEWPETLLLMNPNSRGSPNTLTAKRTEAELTR 144
+C VCK K K N P W E ++ + G+P + +R E T+
Sbjct: 405 YCYVCKEKKMKTYNIHPFWEERYCPVH-EADGTPKCCSCERLEPRGTK 451
>At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 304
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 54 MAGDSSVDESQFKGLSKYFNSQTNRGRANTAKATYAVCGALI 179
+ GDS D+ + + Y+ + RG+ +K T CG ++
Sbjct: 197 LIGDSDEDDDDYGDENAYYGGKRKRGK-KQSKYTCDTCGKVL 237
>At5g39420.1 68418.m04775 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 644
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 61 ETLLLMNPNSRGSPNTLTAKRTEAELTRP 147
ETLL M P+ RG+ + +A +E LTRP
Sbjct: 367 ETLLSMEPDKRGTAS--SALNSEYFLTRP 393
>At3g45790.1 68416.m04955 protein kinase-related contains eukaryotic
protein kinase domain, INTERPRO:IPR000719
Length = 376
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 22 LHKAKIINFPEWPETLLLMNPNSRGSPNTLTAK 120
+H+A II+ PE +LL +R PN AK
Sbjct: 216 IHRANIIHCDIKPENILLAPVENRIRPNGYVAK 248
>At1g77460.1 68414.m09020 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2110
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 79 NPNSRGSPNTLTAKRTEAELTRPRRPMQSAVH*SCISLLDQKSQRN 216
NPNS+ + +L A+ + ++ + S V S I LL+QK+ N
Sbjct: 201 NPNSQANAASLLARLVLSFCDSIQKILNSGVVKSLIQLLEQKNDIN 246
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,169,720
Number of Sequences: 28952
Number of extensions: 98186
Number of successful extensions: 279
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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