Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A10
(348 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 212 1e-54
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 204 4e-52
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 190 4e-48
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 165 2e-40
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 157 6e-38
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 129 1e-29
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 93 1e-18
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 89 1e-17
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 89 1e-17
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 86 1e-16
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 83 2e-15
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 80 9e-15
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 76 2e-13
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 75 3e-13
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 75 3e-13
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 73 1e-12
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 72 2e-12
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 72 3e-12
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 70 1e-11
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 69 3e-11
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 68 4e-11
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 66 2e-10
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 60 8e-09
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.012
UniRef50_Q0UHQ9 Cluster: Putative uncharacterized protein; n=1; ... 33 1.0
UniRef50_Q5C2N1 Cluster: SJCHGC03405 protein; n=1; Schistosoma j... 33 1.8
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 33 1.8
UniRef50_Q2HDI7 Cluster: Putative uncharacterized protein; n=1; ... 31 4.1
UniRef50_Q2H9J8 Cluster: Putative uncharacterized protein; n=1; ... 31 4.1
UniRef50_Q2CES0 Cluster: Polysaccharide biosynthesis protein; n=... 31 5.5
UniRef50_Q4QD18 Cluster: Putative uncharacterized protein; n=2; ... 31 7.2
UniRef50_A1CQ74 Cluster: Putative uncharacterized protein; n=1; ... 31 7.2
UniRef50_Q67JJ8 Cluster: D-Aminoacylase; n=1; Symbiobacterium th... 30 9.5
UniRef50_Q9LP48 Cluster: F28N24.12 protein; n=5; Magnoliophyta|R... 30 9.5
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 212 bits (518), Expect = 1e-54
Identities = 91/115 (79%), Positives = 106/115 (92%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
RPGSK+NKKE+VEAVTI+ETPPMV VG VGY+ETP GLR T++AEH+S++C+R
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKR 116
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 204 bits (497), Expect = 4e-52
Identities = 87/115 (75%), Positives = 102/115 (88%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
+PGSK+NKKE+VEAVTI+ETPPMV G GY++TP G RAL TIWAEH+SE+ RR
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARR 116
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 190 bits (464), Expect = 4e-48
Identities = 83/115 (72%), Positives = 99/115 (86%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
RPG KI+K+E VEAVTI+ETPP+V VG VGY+ TP GLR+ TI+AEH+S++CRR
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRR 116
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 165 bits (400), Expect = 2e-40
Identities = 72/115 (62%), Positives = 91/115 (79%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SH KF PRHG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ D
Sbjct: 53 SHCKFEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVD 112
Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
RPGSK+NKKE+VE VTI+E PPMV VG VGY +TP G + + T+WA H S + RR
Sbjct: 113 RPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRR 167
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 157 bits (380), Expect = 6e-38
Identities = 70/110 (63%), Positives = 86/110 (78%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
S+R FSAPRHGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++ D
Sbjct: 2 SYRNFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMS 331
RP SK+NKKE+VE V I+ETPPMV +G VGYIE P GL ++AEH+S
Sbjct: 62 RPESKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHIS 111
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 129 bits (311), Expect = 1e-29
Identities = 57/97 (58%), Positives = 77/97 (79%)
Frame = +2
Query: 56 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 235
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 236 ETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
ET P + VG VG ET GL+ +++A+H+S +C+R
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKR 97
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 93.1 bits (221), Expect = 1e-18
Identities = 53/107 (49%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Frame = +2
Query: 8 RKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRP 187
RK APR GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV DRP
Sbjct: 4 RKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRP 62
Query: 188 GSKINKKEIVEAVTIIETPPM--VCVGAVGYIETPHGLRALLTIWAE 322
G + KEI VTI+ETPPM V GY + G +L WA+
Sbjct: 63 GRPTSGKEIFVPVTIVETPPMFVAAVRLYGY-DPNRGRYSLGEAWAQ 108
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 89.4 bits (212), Expect = 1e-17
Identities = 42/103 (40%), Positives = 65/103 (63%)
Frame = +2
Query: 23 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 202
P+ GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 203 KKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMS 331
+EI +AVT++E PPM + GY TP+G++ IWA+ S
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSS 108
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 89.4 bits (212), Expect = 1e-17
Identities = 44/99 (44%), Positives = 61/99 (61%)
Frame = +2
Query: 23 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 202
P+ GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 203 KKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWA 319
E+ +AVT++E PPM + GY TP+G + WA
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA 104
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 86.2 bits (204), Expect = 1e-16
Identities = 44/108 (40%), Positives = 58/108 (53%)
Frame = +2
Query: 23 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 202
PR GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 203 KKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
E VT++ETPPM Y +TP+G + L +WA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDR 112
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 82.6 bits (195), Expect = 2e-15
Identities = 47/104 (45%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Frame = +2
Query: 8 RKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRP 187
RK APR GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+ DR
Sbjct: 4 RKKEAPRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDRE 60
Query: 188 GSKINKKEIVEAVTIIETPPMVCVGAVGYIETPH-GLRALLTIW 316
+EI VT+IETPPMV +GA Y P+ G AL +W
Sbjct: 61 HVDTAGQEIFVPVTVIETPPMVVLGARVYGYDPNRGRYALTEVW 104
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 80.2 bits (189), Expect = 9e-15
Identities = 39/100 (39%), Positives = 55/100 (55%)
Frame = +2
Query: 23 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 202
PR GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 203 KKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAE 322
+EI VTI++ PPM Y TP G R + WAE
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAE 108
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 75.8 bits (178), Expect = 2e-13
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 19/123 (15%)
Frame = +2
Query: 5 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVHLT 130
HRK+SAPRHGS+G P+KR+ + +++++P K KPV L
Sbjct: 3 HRKYSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LL 61
Query: 131 AFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGAVGY-IETPHGLRALL 307
++ YKAGM+H + DRP + + KEI VT+++ PP++ +G GY I HGL +
Sbjct: 62 GYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFG 121
Query: 308 TIW 316
+W
Sbjct: 122 EVW 124
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 74.9 bits (176), Expect = 3e-13
Identities = 37/90 (41%), Positives = 50/90 (55%)
Frame = +2
Query: 5 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 184
HRK ++PR GS G P+KRS + +P+ + P L F+GYK GMTHV D
Sbjct: 3 HRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDW 61
Query: 185 PGSKINKKEIVEAVTIIETPPMVCVGAVGY 274
P S N KEI VT++E PP++ + Y
Sbjct: 62 PNSPTNGKEIYMPVTVLEVPPIIPLALRAY 91
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 74.9 bits (176), Expect = 3e-13
Identities = 39/88 (44%), Positives = 53/88 (60%)
Frame = +2
Query: 11 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 190
K PR GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG
Sbjct: 3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 191 SKINKKEIVEAVTIIETPPMVCVGAVGY 274
N KEI VTIIETPP+ G Y
Sbjct: 60 -LTNGKEIFMPVTIIETPPLRVFGIRAY 86
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 73.3 bits (172), Expect = 1e-12
Identities = 37/108 (34%), Positives = 56/108 (51%)
Frame = +2
Query: 23 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 202
PR GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 203 KKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
+E A T+IE PP+ V Y +TP+G + L +WA+ + +D R
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLER 110
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 72.1 bits (169), Expect = 2e-12
Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Frame = +2
Query: 23 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 202
PR GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P S
Sbjct: 8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNA 64
Query: 203 KKEIVEAVTIIETPPM-VCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
+E+ +TI+E PP+ VC V + L L +WA+++ ++ R
Sbjct: 65 GQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELER 113
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 71.7 bits (168), Expect = 3e-12
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Frame = +2
Query: 20 APRHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 193
APR GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 6 APRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHS 61
Query: 194 KINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIW 316
EI VTI+E P M G Y ++P+G + + W
Sbjct: 62 ATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAW 102
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 69.7 bits (163), Expect = 1e-11
Identities = 35/105 (33%), Positives = 59/105 (56%)
Frame = +2
Query: 8 RKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRP 187
RK +PR GS+ + P+ R++ +++A+PK D +P + A G+KAG +V DR
Sbjct: 4 RKRHSPRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDRE 62
Query: 188 GSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAE 322
K++V T++ TPP++ +G GY + GL A ++AE
Sbjct: 63 KVPNAGKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAE 107
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 68.5 bits (160), Expect = 3e-11
Identities = 35/111 (31%), Positives = 60/111 (54%)
Frame = +2
Query: 5 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 184
HRKFS PR GS+ + P+ R+R +++ +P+ +P L A G+KAG +V DR
Sbjct: 3 HRKFSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSIDDR 60
Query: 185 PGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSED 337
+ K++V T++ TPP+ +G GY + +G ++AE + +
Sbjct: 61 EHTPNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPRE 111
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 68.1 bits (159), Expect = 4e-11
Identities = 35/99 (35%), Positives = 57/99 (57%)
Frame = +2
Query: 20 APRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 199
APR GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + I
Sbjct: 8 APRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNI 57
Query: 200 NKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIW 316
N + + VT++E P ++ +GA Y + L+ + +++
Sbjct: 58 NGERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLY 96
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 66.1 bits (154), Expect = 2e-10
Identities = 39/104 (37%), Positives = 54/104 (51%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKF PR GS+GF PKKRS R K + + +++ F K THV+R +
Sbjct: 2 SHRKFEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRICN 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTI 313
SK + I++ VT++E PP+ VG Y + L L TI
Sbjct: 62 IVSSKSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 60.5 bits (140), Expect = 8e-09
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Frame = +2
Query: 26 RHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINK 205
R GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 8 RRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVTAG 65
Query: 206 KEIVEAVTIIETPPMVCVGAVGYIETPHG-LRALLTIWAEHMSED 337
+ I VT+IE PP+ +G Y E G + + W +++ ++
Sbjct: 66 QPIFVPVTVIEVPPLDVIGIRLYDEDEEGNMVVVYEKWTQNLDKE 110
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.012
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 71 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 208
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_Q0UHQ9 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 324
Score = 33.5 bits (73), Expect = 1.0
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = -1
Query: 306 SRARRP*GVSMYPTAPTHTIGGVSIIVTASTISF---LLIFDPGRSGSRTTWVIPALYPM 136
+R RRP S PT+P + + V ++VT T + D S S+ ++ A+ P
Sbjct: 78 TRRRRPRSSSTSPTSPGYQVSNVGVVVTHGTDTLEETAFFLDSTISSSKPVILVGAMRPA 137
Query: 135 NAVRCTGLLGSSLGKAFTL 79
A+ G L +L +A TL
Sbjct: 138 TALSADGPL--NLFQAVTL 154
>UniRef50_Q5C2N1 Cluster: SJCHGC03405 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03405 protein - Schistosoma
japonicum (Blood fluke)
Length = 321
Score = 32.7 bits (71), Expect = 1.8
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 17 SAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 139
SA H + G+Y + + RR G AF K D LTAF+
Sbjct: 225 SAQSHITSGYYQQMKYRRDDGSFSAFGKSDKHGSTWLTAFV 265
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 32.7 bits (71), Expect = 1.8
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +2
Query: 56 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 229
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 230 IIETPPMVCVGAVG 271
+ETPP V + VG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_Q2HDI7 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 359
Score = 31.5 bits (68), Expect = 4.1
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Frame = +2
Query: 143 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIET------PPMVCV 259
Y G+T++V P R G++++K E+ V ++E P VCV
Sbjct: 183 YSLGLTNIVSRPSRNGAELSKAEMDAGVAVLEAKVRRWRPEAVCV 227
>UniRef50_Q2H9J8 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 674
Score = 31.5 bits (68), Expect = 4.1
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 224 VTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSE 334
VT+ TPPM+ G V +E GL L +W H SE
Sbjct: 12 VTVRGTPPMLLKGTVSAVEAGTGL-TLSNVWMLHTSE 47
>UniRef50_Q2CES0 Cluster: Polysaccharide biosynthesis protein; n=1;
Oceanicola granulosus HTCC2516|Rep: Polysaccharide
biosynthesis protein - Oceanicola granulosus HTCC2516
Length = 440
Score = 31.1 bits (67), Expect = 5.5
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -1
Query: 276 MYPTAPTHTIGGVSII-VTASTISFLLIFDPGRSGSRTTWVIPALYPMNAVRCTGLLGSS 100
M+P +G V+II + S +S L++F W+ P +P A+ CT L G++
Sbjct: 78 MHPEDSNAIVGTVTIIRLVGSLVSVLIVF-------LVAWLYPIAHPDIAILCTLLAGAA 130
Query: 99 LGKA 88
L K+
Sbjct: 131 LLKS 134
>UniRef50_Q4QD18 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 4825
Score = 30.7 bits (66), Expect = 7.2
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 185 PGSKINKKEIVEAV----TIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMS 331
PG KKE+ A+ T I P V VG I + H L A L +WA HM+
Sbjct: 1179 PGGDFGKKELSPALRNRFTEIYVRPTTDVTEVGMILS-HRLEAELAVWAPHMA 1230
>UniRef50_A1CQ74 Cluster: Putative uncharacterized protein; n=1;
Aspergillus clavatus|Rep: Putative uncharacterized
protein - Aspergillus clavatus
Length = 290
Score = 30.7 bits (66), Expect = 7.2
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 139 WVQSWYDPRCS*T*PSWIKDQQKGDCRGSNNY*DSTNGMCWCC 267
W + W+ PR S S KD++K D G S G C CC
Sbjct: 192 WSRGWFGPRSSWITKSSEKDKRKPDVEGEPI--PSGGGSCCCC 232
>UniRef50_Q67JJ8 Cluster: D-Aminoacylase; n=1; Symbiobacterium
thermophilum|Rep: D-Aminoacylase - Symbiobacterium
thermophilum
Length = 482
Score = 30.3 bits (65), Expect = 9.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 204 LLIFDPGRSGSRTTWVIPALYP 139
L++FDP RTTW+ P YP
Sbjct: 428 LVLFDPATVADRTTWLSPQEYP 449
>UniRef50_Q9LP48 Cluster: F28N24.12 protein; n=5; Magnoliophyta|Rep:
F28N24.12 protein - Arabidopsis thaliana (Mouse-ear
cress)
Length = 193
Score = 30.3 bits (65), Expect = 9.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 125 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 247
+TA KA HV+++P P S ++++++ A I+ PP
Sbjct: 37 ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 376,047,483
Number of Sequences: 1657284
Number of extensions: 7148652
Number of successful extensions: 17654
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 17310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17635
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 11131607110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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