Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A10
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   197   4e-52
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   197   5e-52
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   4.4  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    24   5.9  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    24   5.9  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   5.9  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       24   5.9  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  197 bits (481), Expect = 4e-52
 Identities = 86/115 (74%), Positives = 102/115 (88%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ D
Sbjct: 2   SHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLD 61

Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
           RPGSK++K+EI+EAVTIIETPPMV VG VGY+ETP GLR+L T+WAEH+SE+ +R
Sbjct: 62  RPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKR 116


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  197 bits (480), Expect = 5e-52
 Identities = 85/115 (73%), Positives = 102/115 (88%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ D
Sbjct: 2   SHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLD 61

Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
           RPGSK++K+EI+EAVT+IETPPMV VG VGY+ETP GLR+L T+WAEH+SE+ +R
Sbjct: 62  RPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKR 116


>SPBC609.03 |||WD repeat protein, human IQWD1
          family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 7/21 (33%), Positives = 17/21 (80%)
 Frame = +1

Query: 1  VAQEVFGTSSWVDGILPQEEI 63
          ++++++G S+W+ GI  Q+E+
Sbjct: 21 ISRDIYGNSTWLTGIDLQKEL 41


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +2

Query: 119 VHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLR 298
           + + A++G   G        DR G    K  ++ A  I+     +C GA GY  + +G+ 
Sbjct: 120 IGMIAYVGTIVGQLSFGWYSDRFG---RKNGMITATIILIVSTALCTGAYGYKGSINGML 176

Query: 299 ALL 307
           + L
Sbjct: 177 SAL 179


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 71  HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 163
           H   V++ PK+ P KPV  T    +  G  H
Sbjct: 294 HSANVQSRPKNYPQKPVQTTPEAVHANGSMH 324


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -1

Query: 252  TIGGVSIIVTASTISFLLIFDPGRSGSRTTWVIPALYPMNAVRCTGL 112
            ++G V++ V  +T     I++           IP++YP+  V+  G+
Sbjct: 1463 SVGDVNVKVNRNTREISFIYNVDEHKLEMAIKIPSVYPLQNVQVEGI 1509


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 137 IGYKAGMTHVVRE-PDRPGSKINKKEIVEAVTIIETPPMVC 256
           I  K  +  +VR  P+RP S++NK +++    I E    +C
Sbjct: 84  IASKEFLNELVRRFPERPPSRLNKIQVMILSLIEEWRKTIC 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,847
Number of Sequences: 5004
Number of extensions: 27779
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)