Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A10
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 190 3e-49
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 188 1e-48
05_04_0324 - 20273797-20274261 27 3.1
01_05_0662 - 24103475-24103735,24103831-24104085,24104280-241044... 27 5.3
10_08_0526 + 18547154-18547197,18547320-18547467,18547558-185476... 26 7.1
10_02_0173 + 6191676-6191764,6192147-6192260,6192411-6192638,619... 26 7.1
04_02_0018 - 8595479-8595678,8595782-8595935,8596396-8597032,859... 26 7.1
09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991... 26 9.3
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991... 26 9.3
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 26 9.3
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 190 bits (462), Expect = 3e-49
Identities = 81/115 (70%), Positives = 100/115 (86%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVE 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
+PGSK++KKE EAVTIIETPP+V VG V Y++TP GLR+L ++WA+H+SE+ RR
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRR 116
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 188 bits (458), Expect = 1e-48
Identities = 80/115 (69%), Positives = 100/115 (86%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVE 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
+PGSK++KKE EAVTIIETPP+V VG V Y++TP GLR+L ++WA+H+SE+ RR
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRR 116
>05_04_0324 - 20273797-20274261
Length = 154
Score = 27.5 bits (58), Expect = 3.1
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +2
Query: 92 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGA 265
FP D+P K VH+ G + +T ++ E P + +N EA + P CVG
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 266 VGYIETPHGLRAL 304
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
>01_05_0662 -
24103475-24103735,24103831-24104085,24104280-24104451,
24104535-24104762,24104864-24104997,24105101-24105184,
24105273-24105563,24105660-24105992,24106081-24106334,
24106435-24106591,24106674-24106777,24106879-24107039,
24107216-24107529,24107614-24107895,24107991-24108292,
24108367-24108457,24108566-24108619,24108785-24108861,
24108963-24109207,24109322-24109410,24110811-24111254
Length = 1443
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 258 THTIGGVSIIVTASTISFLLIF-DPGRSGSRTTWVIPALYPMNAVRCTGLLGSS 100
+HT G +S++ A+ F+L D + W+ P Y NA+ LG S
Sbjct: 665 SHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHS 718
>10_08_0526 +
18547154-18547197,18547320-18547467,18547558-18547604,
18548216-18548270,18548365-18548403,18548517-18548688,
18549135-18549201,18549378-18549434,18549637-18549873,
18551549-18551629,18551803-18551935
Length = 359
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +2
Query: 113 KPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGA 265
+ + L GY G + R D P K + E+V I+ PP C A
Sbjct: 34 RELRLVEAFGYTLGGMFLARYDDSPAGKFD--ELVVIAGIVWNPPTSCAWA 82
>10_02_0173 +
6191676-6191764,6192147-6192260,6192411-6192638,
6192898-6193183,6193350-6193500,6193615-6193811
Length = 354
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 279 SMYPTAPTHTIGGVSIIVTASTISF 205
SMYP P H I GV V A SF
Sbjct: 61 SMYPLVPGHEIAGVVTEVGADVKSF 85
>04_02_0018 -
8595479-8595678,8595782-8595935,8596396-8597032,
8597126-8597217
Length = 360
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 285 GVSMYPTAPTHTIGGVSIIVTASTISF 205
G++MYP P H I GV V + F
Sbjct: 60 GITMYPVVPGHEITGVVTKVGTNVAGF 86
>09_02_0499 -
9917891-9918148,9918240-9918494,9918769-9918940,
9919056-9919283,9919628-9919761,9919842-9919925,
9920007-9920297,9920569-9920901,9921029-9921171,
9921266-9921379,9921470-9921626,9921709-9921812,
9921914-9922074,9922158-9922474,9922574-9922855,
9923205-9923506,9923603-9923693,9923864-9923917,
9924052-9924128,9924213-9924372,9924473-9924557,
9924635-9924723,9925791-9925925
Length = 1341
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 162 WVIPALYPMNAVRCTGLLGSSLGKAFTLPR*RRDL 58
W+ P +Y NA+ LG S K T+P R L
Sbjct: 596 WISPLMYAQNAISVNEFLGHSWNK--TIPGFREPL 628
>04_04_0447 -
25297351-25297575,25297663-25298370,25298824-25299123,
25299876-25299927,25300530-25300673,25301002-25301258,
25301533-25301739,25301819-25301992,25302409-25302432,
25302610-25302677,25304607-25304665,25304802-25304877,
25304965-25305070,25305268-25305377,25305831-25305995,
25306571-25306656,25306893-25306957,25307280-25307330,
25309009-25309056,25309677-25309796,25310226-25310301,
25310780-25310877,25312149-25312404,25313117-25313238
Length = 1198
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -1
Query: 240 VSIIVTASTISFLL--IFDPGRSGSRTTWVIPALYPMNAVRCTGLLGSSLGKAFTLP 76
++++V ST+ + +F G R WV+P + P+ T + S + + T P
Sbjct: 750 INVLVFCSTMLIITKALFGHVSEGRRRGWVLPTISPLCKDNVTEEISSEMELSGTFP 806
>01_03_0179 +
13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 162 WVIPALYPMNAVRCTGLLGSSLGKAF 85
W+ P Y NA+ LG S K+F
Sbjct: 746 WISPLSYAQNAISTNEFLGRSWNKSF 771
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,359,218
Number of Sequences: 37544
Number of extensions: 203743
Number of successful extensions: 539
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -