Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A10
         (348 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               199   6e-52
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         199   6e-52
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)                  33   0.048
SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_54689| Best HMM Match : DUF1525 (HMM E-Value=6.3)                   27   3.2  
SB_52907| Best HMM Match : RVT_1 (HMM E-Value=2.4e-17)                 27   3.2  
SB_13354| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)                   27   5.5  
SB_24794| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_9387| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.3  
SB_28392| Best HMM Match : Exo_endo_phos (HMM E-Value=0.77)            26   9.7  
SB_57100| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_46645| Best HMM Match : Exo_endo_phos (HMM E-Value=0.044)           26   9.7  
SB_4374| Best HMM Match : GCS (HMM E-Value=6.2)                        26   9.7  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  199 bits (485), Expect = 6e-52
 Identities = 86/115 (74%), Positives = 102/115 (88%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE +
Sbjct: 1   SHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVE 60

Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
           +PGSK+NKKE VEAVTIIETPPM+ VG VGYIETP G+R L TIWAEH+SE+C+R
Sbjct: 61  KPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKR 115


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  199 bits (485), Expect = 6e-52
 Identities = 86/115 (74%), Positives = 102/115 (88%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE +
Sbjct: 49  SHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVE 108

Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
           +PGSK+NKKE VEAVTIIETPPM+ VG VGYIETP G+R L TIWAEH+SE+C+R
Sbjct: 109 KPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKR 163


>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
          Length = 635

 Score = 33.5 bits (73), Expect = 0.048
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +1

Query: 112 QTRAPYCVHWVQSWYDPRCS*T*PSWIKDQQKGDCRGSNNY*DSTNGMCWCCWIH*NPSW 291
           Q   P  VH V    DP       SW+  ++K  CR SN Y +  +G+C     H     
Sbjct: 212 QDSVPETVHHVVCHVDPLVD---TSWVNLKKKVKCRRSNPYQNENDGVCCFEHAHIIKVT 268

Query: 292 SPCS 303
           SPC+
Sbjct: 269 SPCT 272


>SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 8   RKFSAPRHGSMGFYPKKRSRRHRGK-VKAFPKDDPSKPVH 124
           R+F  P+ G +G Y ++  R H GK +   PK +P +  +
Sbjct: 145 RRFWMPKFGHVGPYSEQVKRDHDGKIIDIIPKGNPMEDAY 184


>SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 65  RRHRGKVKAFPKDDPSKPVHL 127
           R HR  + AFP D P+ PV L
Sbjct: 7   RAHRSSLHAFPPDGPAHPVSL 27


>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 65  RRHRGKVKAFPKDDPSKPVHL 127
           R HR  + AFP D P+ PV L
Sbjct: 15  RAHRSSLHAFPPDGPAHPVSL 35


>SB_54689| Best HMM Match : DUF1525 (HMM E-Value=6.3)
          Length = 298

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 47  YPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           +P  ++ +   +V  +P  D    +H+ AF+G+K+  T  +  P+
Sbjct: 70  HPSSQNVKTSLRVPIYPPKDIQVDLHIKAFVGHKSRFTMYIPCPE 114


>SB_52907| Best HMM Match : RVT_1 (HMM E-Value=2.4e-17)
          Length = 344

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 50  PKKRSRRHRGKVKAFPKDDPSKP 118
           PK   RR+R K+   PK DP  P
Sbjct: 279 PKHNIRRNRRKLNMLPKPDPETP 301


>SB_13354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 147 LYPMNAVRCTGLLGSSLGKAFTLPR*RRDLFL 52
           L P  +VR  G L  S+ +AF LP+ +RD  L
Sbjct: 103 LVPNTSVRFLGYLCDSVKQAFILPQDKRDYLL 134


>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 53  KKRSRRHRGKVKAFPKDDPSKPVHLTAFI-GYKAGMTHVVREPD 181
           +K  ++ + +  + PKD  S P HL A +  +   + H+VR  D
Sbjct: 384 RKSKKKEKRQSSSRPKDADSSPQHLAASVESFANYLKHLVRPED 427


>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
          Length = 1277

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -3

Query: 346 PSAVLRHVLSPNSE*STETMRGFNVSNSTNTYHWWSXXXXXXXXXXLFVDL*SRTVRF 173
           P + L   L P+S  ST+ + G++V+     Y W            + VDL S    F
Sbjct: 322 PKSKLSFSLGPSSNPSTKKINGYSVTGHCGKYLWIRIALLEKLLTRIVVDLKSYASMF 379


>SB_24794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 267 TAPTHTIGGVSIIVTASTISFLLIFDPGRSGSRTT 163
           ++P+HT  G     T ST+SFL    P  S   T+
Sbjct: 41  SSPSHTPPGTPTTPTTSTVSFLPSTTPSSSSQGTS 75


>SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 239 TPPMVCVGAVGYIETPHGLRAL-LTIWAEHMSEDCR 343
           TP  +C+G+ GY+ T   L+ L LT+    M E  +
Sbjct: 301 TPGRLCIGSYGYVATQQFLQLLRLTVLPPVMIEKAK 336


>SB_9387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 65  RRHRGKVKAFPKDDPSKPVHL 127
           R H+  + AFP D P+ PV L
Sbjct: 7   RAHQSSLHAFPPDGPAHPVSL 27


>SB_28392| Best HMM Match : Exo_endo_phos (HMM E-Value=0.77)
          Length = 549

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 167 VREPDRPGSKINKKEIVEAVTIIETPP 247
           +R+P R   K  KKE     +++++PP
Sbjct: 81  IRKPPRSKRKQKKKETANHTSVVDSPP 107


>SB_57100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 65  RRHRGKVKAFPKDDPSKPVHL 127
           R HR  + AFP D P+ P  L
Sbjct: 7   RAHRSSLHAFPPDGPAHPFSL 27


>SB_46645| Best HMM Match : Exo_endo_phos (HMM E-Value=0.044)
          Length = 464

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 167 VREPDRPGSKINKKEIVEAVTIIETPP 247
           +R+P R   K  KKE     +++++PP
Sbjct: 150 IRKPPRSKRKPKKKETANHTSVVDSPP 176


>SB_4374| Best HMM Match : GCS (HMM E-Value=6.2)
          Length = 326

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 167 VREPDRPGSKINKKEIVEAVTIIETPP 247
           +R+P R   K  KKE     +++++PP
Sbjct: 150 IRKPPRSKRKPKKKETANHTSVVDSPP 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,801,999
Number of Sequences: 59808
Number of extensions: 232879
Number of successful extensions: 568
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)