Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A10
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal prote...   204   2e-53
Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal prote...   204   2e-53
Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical p...   204   2e-53
Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical p...   204   2e-53
Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical pr...   204   2e-53
Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical pr...   204   2e-53
Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical p...    62   1e-10
Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical pr...    62   1e-10
U80836-14|AAB37896.1|  185|Caenorhabditis elegans Hypothetical p...    28   2.1  
AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical ...    27   2.8  
AC024761-6|AAF59467.3|  599|Caenorhabditis elegans Hypothetical ...    27   4.9  
AC024761-5|AAU05550.1|  601|Caenorhabditis elegans Hypothetical ...    27   4.9  

>Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  204 bits (497), Expect = 2e-53
 Identities = 87/115 (75%), Positives = 102/115 (88%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2   SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61

Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
           +PGSK+NKKE+VEAVTI+ETPPMV  G  GY++TP G RAL TIWAEH+SE+ RR
Sbjct: 62  KPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARR 116


>Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  204 bits (497), Expect = 2e-53
 Identities = 87/115 (75%), Positives = 102/115 (88%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2   SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61

Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
           +PGSK+NKKE+VEAVTI+ETPPMV  G  GY++TP G RAL TIWAEH+SE+ RR
Sbjct: 62  KPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARR 116


>Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  204 bits (497), Expect = 2e-53
 Identities = 87/115 (75%), Positives = 102/115 (88%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2   SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61

Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
           +PGSK+NKKE+VEAVTI+ETPPMV  G  GY++TP G RAL TIWAEH+SE+ RR
Sbjct: 62  KPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARR 116


>Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  204 bits (497), Expect = 2e-53
 Identities = 87/115 (75%), Positives = 102/115 (88%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2   SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61

Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
           +PGSK+NKKE+VEAVTI+ETPPMV  G  GY++TP G RAL TIWAEH+SE+ RR
Sbjct: 62  KPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARR 116


>Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  204 bits (497), Expect = 2e-53
 Identities = 87/115 (75%), Positives = 102/115 (88%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2   SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61

Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
           +PGSK+NKKE+VEAVTI+ETPPMV  G  GY++TP G RAL TIWAEH+SE+ RR
Sbjct: 62  KPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARR 116


>Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  204 bits (497), Expect = 2e-53
 Identities = 87/115 (75%), Positives = 102/115 (88%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2   SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61

Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
           +PGSK+NKKE+VEAVTI+ETPPMV  G  GY++TP G RAL TIWAEH+SE+ RR
Sbjct: 62  KPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARR 116


>Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 100
           SHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 2   SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34


>Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 100
           SHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 2   SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34


>U80836-14|AAB37896.1|  185|Caenorhabditis elegans Hypothetical
           protein B0432.12 protein.
          Length = 185

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 187 WIKDQQKGDCRGSNNY*DSTNGMCWCC 267
           W+  Q+KG+C G  NY D  +G+   C
Sbjct: 85  WLGGQRKGECYGMRNY-DKDHGLNATC 110


>AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical
           protein Y45F10D.7 protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 328 HVLSPNSE*STETMRGFNVSNSTNTYHWWS 239
           HVLS   + S   +R F V N T  +H W+
Sbjct: 333 HVLSAGKDGSIPKIRCFFVDNETEAWHSWT 362


>AC024761-6|AAF59467.3|  599|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.5a protein.
          Length = 599

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 80  KVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP--DRPGSKINKKEIVEAVTIIETP 244
           KV A   +DPS      + +      T+  + P  D P S  N KEI E  TI+ +P
Sbjct: 310 KVDASKWNDPSAYATAPSTVDSTTPKTYREQPPTADAPFSSDNSKEIHETSTIVASP 366


>AC024761-5|AAU05550.1|  601|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.5b protein.
          Length = 601

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 80  KVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP--DRPGSKINKKEIVEAVTIIETP 244
           KV A   +DPS      + +      T+  + P  D P S  N KEI E  TI+ +P
Sbjct: 312 KVDASKWNDPSAYATAPSTVDSTTPKTYREQPPTADAPFSSDNSKEIHETSTIVASP 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,511,009
Number of Sequences: 27780
Number of extensions: 166360
Number of successful extensions: 395
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)