Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A10
(348 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 194 2e-50
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 184 1e-47
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 184 1e-47
At1g29195.1 68414.m03572 expressed protein 30 0.37
At4g16110.1 68417.m02442 two-component responsive regulator fami... 27 4.5
At3g07070.1 68416.m00840 protein kinase family protein contains ... 26 6.0
At2g47420.1 68415.m05919 dimethyladenosine transferase, putative... 26 7.9
At1g12740.1 68414.m01479 cytochrome P450 family protein similar ... 26 7.9
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 194 bits (472), Expect = 2e-50
Identities = 82/115 (71%), Positives = 101/115 (87%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP LT+F+GYKAGMTH+VR+ +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVE 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
+PGSK++KKE EAVTIIETPPMV VG VGY++TP GLR+L T+WA+H+SE+ RR
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRR 116
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 184 bits (449), Expect = 1e-47
Identities = 80/115 (69%), Positives = 97/115 (84%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVE 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
+PGSK++KKE EAVTIIETP MV VG V Y++TP GLR+L T+WA+H+SE+ RR
Sbjct: 62 KPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRR 116
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 184 bits (449), Expect = 1e-47
Identities = 80/115 (69%), Positives = 97/115 (84%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVE 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETPHGLRALLTIWAEHMSEDCRR 346
+PGSK++KKE EAVTIIETP MV VG V Y++TP GLR+L T+WA+H+SE+ RR
Sbjct: 62 KPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRR 116
>At1g29195.1 68414.m03572 expressed protein
Length = 193
Score = 30.3 bits (65), Expect = 0.37
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 125 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 247
+TA KA HV+++P P S ++++++ A I+ PP
Sbjct: 37 ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77
>At4g16110.1 68417.m02442 two-component responsive regulator family
protein / response regulator family protein similar to
ARR2 protein GI:4210451 from [Arabidopsis thaliana];
contains Pfam profile: PF00072 response regulator
receiver domain
Length = 644
Score = 26.6 bits (56), Expect = 4.5
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = +2
Query: 119 VHLTAFIGYKAGMTHVVREPDRPGSKINK-KEIVEAVTIIETPPMVCVG----AVGYIET 283
VH+ G+K + HV E D P +N K +V ++ ++ +V G AV Y+
Sbjct: 76 VHMPDMDGFKL-LEHVGLEMDLPVINLNVLKPLVIVMSADDSKSVVLKGVTHGAVDYLIK 134
Query: 284 PHGLRALLTIW 316
P + AL IW
Sbjct: 135 PVRIEALKNIW 145
>At3g07070.1 68416.m00840 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 414
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 146 KAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGAVGY 274
K GM V++ DR G + NK+ IVE + + V +GY
Sbjct: 100 KTGMIVAVKQLDRNGLQGNKEFIVEVLMLSLLHHKHLVNLIGY 142
>At2g47420.1 68415.m05919 dimethyladenosine transferase, putative
similar to SP|P41819 Dimethyladenosine transferase (EC
2.1.1.-) (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
dimethyltransferase) {Saccharomyces cerevisiae};
contains Pfam profile PF00398: ribosomal RNA adenine
dimethylase family protein
Length = 353
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/17 (70%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Frame = +2
Query: 164 VVR-EPDRPGSKINKKE 211
VVR EP RPG ++NKKE
Sbjct: 204 VVRIEPRRPGPQVNKKE 220
>At1g12740.1 68414.m01479 cytochrome P450 family protein similar to
Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
Length = 472
Score = 25.8 bits (54), Expect = 7.9
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 136 HWVQSWYDPRC 168
HWV SW +P+C
Sbjct: 17 HWVYSWRNPKC 27
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,155,457
Number of Sequences: 28952
Number of extensions: 156873
Number of successful extensions: 401
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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