Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A09
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               30   1.6  
SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_17034| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)             29   2.1  
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)         29   2.7  
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)             29   2.7  
SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)               28   6.3  

>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -1

Query: 400 LPAAVT-LSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAK 224
           LPAAV  +   P     V+ TP    L  ATP VA      LVK+K P  L I      K
Sbjct: 256 LPAAVPPIKTKPAAPSPVKATPTVAPLVKATPMVAP-----LVKAKLPQPLRILYICEEK 310

Query: 223 GTL 215
           GT+
Sbjct: 311 GTV 313


>SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 332 RPRSKSHGYTHPRVRRQGDSC 394
           RP S+SHG  HPRV    D+C
Sbjct: 92  RPTSQSHGNRHPRVPIDKDNC 112


>SB_17034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 235 LPAKGTLTPA-PEVPSELSVRAPCASLRTLELVNSSGSS 122
           L AKG L+   P    E  +RAPC+SL   E   SSG S
Sbjct: 13  LEAKGRLSERRPSAKCESILRAPCSSLEDKESDESSGLS 51


>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 646

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 24/95 (25%), Positives = 45/95 (47%)
 Frame = +3

Query: 138 LTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQKLGAATAGVA 317
           L   R  +DA   +    D T    ++  F  N  + V   G ++   R  + + T  ++
Sbjct: 398 LGDPRYMKDADKVVKKMVDQTHSNNLR-KFIDNRTHPVKYYGPINY--RTDVTSGTTHLS 454

Query: 318 LDNVNGHGVSLTDTHIPGFGDKVTAAGKVNLFHND 422
           + + +G+GVSLT +    FG K+ +  K+ + +ND
Sbjct: 455 VVDADGNGVSLTSSINKYFGSKIRSK-KLGIIYND 488


>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
          Length = 1084

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +2

Query: 326 CKRPRSKSHGYTHPRVRRQGDSCRQS--ESLPQRLPRHHSEGFR-HQKYCQISLMYPTST 496
           C  P  K+    HP  R+ GD+C     E + + LP  H E  R ++   ++  + P   
Sbjct: 361 CSEPCPKTLECGHPCARKCGDTCTSKCIEKIEKTLPCGHKETVRCYKDIYEVKCLEPCKD 420

Query: 497 LSVAE 511
           L   E
Sbjct: 421 LLKCE 425


>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
          Length = 1026

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 335 PRSKSHGYTHPRVRRQGDSC 394
           P + SH YTH  VR  GD+C
Sbjct: 260 PHALSHNYTHLAVRYYGDAC 279


>SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 335 PRSKSHGYTHPRVRRQGDSC 394
           P + SH YTH  VR  GD+C
Sbjct: 260 PHALSHNYTHLAVRYYGDAC 279


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -1

Query: 400  LPAAVTL-SPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAK 224
            LP  V+L S  PG       TP P +L+S TP+  +    L  K+  P++L+   S P  
Sbjct: 1042 LPVPVSLTSKTPGPVSLTSKTPGPVSLTSKTPSPVS----LTSKTPGPVSLSSKTSGPVS 1097

Query: 223  GT-LTPAP 203
             T  TP P
Sbjct: 1098 LTSKTPGP 1105


>SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)
          Length = 722

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 498 SVEVGYISDIWQYFWWRKPSL*CRGNRCGRDSLCRQLS 385
           S E G+  D+  YFW  +PS  C   +  R+  C++++
Sbjct: 22  SPECGWCEDL-NYFWGGQPSPRCNDLQSHREKFCKRVA 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,856,347
Number of Sequences: 59808
Number of extensions: 400291
Number of successful extensions: 1194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)