Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A08
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   3.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   5.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -1

Query: 394 RPFSPALSNTDDKPSSLSGSRTNIRKPDSLYGNSTSCASSSL 269
           R  SP L+N D  P+  S    N      + GN     +S L
Sbjct: 195 RVLSPPLNNNDATPTDFSMGVKNNHVSSKVEGNGVHEENSPL 236



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 136 YSSRVTGTCLSTQVKLKRKISMLTLQP 216
           Y+  V G  LST++ LKR       QP
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQHFQP 398


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -2

Query: 324 YENQTPCTAIRQAVLQVLYFLYKITVVADSWLAS 223
           YE      A    +  +L +L ++ V A +W++S
Sbjct: 310 YEKSLALAAFSLMLTSILRYLQELHVDAPTWISS 343


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 472 NWTLNL*CPSLEFRKYSTSLHQTSS 546
           NW L + C S+  +  ++++HQ  S
Sbjct: 3   NWLLLIVCLSIACQDVTSAIHQRKS 27


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 412 LNTSSRRPFSPALSNTDDKPSSLSGS 335
           LN SSRR      +  D+KP  +S +
Sbjct: 246 LNVSSRRSDMNGTTPLDEKPLDVSSN 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,966
Number of Sequences: 438
Number of extensions: 3568
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)