Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A07
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    29   0.47 
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    27   2.5  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   2.5  
SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   5.8  

>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 190 SASLRAPESQRKRLPQPLPQHDDHGTKPLFGE 95
           ++S + PE  +  LP+PLP +  H   PL+ +
Sbjct: 8   ASSSQKPEKTKYNLPKPLPAYYPHPGSPLYAD 39


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 223 RPRTTLAAPG*SASLRAPE-SQRKRLPQPLPQHDDHGTKPLF 101
           R R  L+A G SAS    + S+   + QP+P H +    P +
Sbjct: 404 RERNNLSAEGTSASPSLDKKSESTNIVQPIPSHPNDSLNPFY 445


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 160 RKRLPQPLPQHDDHGTK 110
           R+R P P PQ+D+HG +
Sbjct: 128 RERSPSPPPQYDNHGRR 144


>SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 8   CFLTWKRPSTASGMKVLSTSSP 73
           CFL+W++      +K++S+S P
Sbjct: 124 CFLSWEKVPLRKRIKIISSSQP 145


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
 Frame = +1

Query: 205 LVLFADVAYFTLSLNKNYAPVYLRP-TLDALPDWL----DRWRLSANVA*TQAMISGRFP 369
           ++LF+  AY     N NYAPV     T+  L  WL     RW    + +    + S  F 
Sbjct: 474 VILFSPKAYPVTGKNFNYAPVIFGAITIFGLISWLSIPASRWSTFYDAS---KLDSNSFD 530

Query: 370 SYPSVSPEGRRPAAVAAGQI 429
              S      + A++A G I
Sbjct: 531 DSSSDKKSLEKAASIAEGSI 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,453
Number of Sequences: 5004
Number of extensions: 44932
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)