Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A07
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0705 - 5259949-5263887,5266207-5266509                           31   0.83 
10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955...    30   1.1  
04_03_0779 - 19507771-19507992,19508678-19508990,19509235-195092...    30   1.1  
04_04_0482 - 25547393-25547455,25547767-25547866,25548154-255482...    29   3.4  
08_01_0065 + 452383-452629,452733-452868,453049-453118,453237-45...    28   5.9  
08_02_0528 - 18217414-18217671                                         27   7.7  
07_01_0627 + 4685077-4685155,4685978-4686336,4686761-4686862,468...    27   7.7  

>02_01_0705 - 5259949-5263887,5266207-5266509
          Length = 1413

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +1

Query: 292 LPDWLDRWRLSANVA*TQAMISGRFPSYP----SVSPEGRRPAAVAAGQIPRRYPQST 453
           +PDW+  W   ++++  Q M  G  P  P    S S E  R     +G IP +  Q T
Sbjct: 490 IPDWIQNWSNVSSISLAQNMFDGPLPGLPLHLVSFSAESNR----LSGSIPAKICQGT 543


>10_06_0008 -
           9533424-9533475,9533526-9535344,9535599-9536364,
           9551969-9552097
          Length = 921

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
 Frame = -3

Query: 295 AKHLALDAGRRGRSFYSVRA*STPRPRTTLAAPG*SASLRAPESQRK--------RLPQP 140
           AKH  L++ +R  + +  +  +  R R T   PG S+S + P+  R         R+PQP
Sbjct: 558 AKHKELESHKRRLANFRNQQGANQRVRYTNPYPGGSSSQQQPQQPRSAPRPQFVVRVPQP 617

Query: 139 LPQHDDHGTK 110
             Q +  GT+
Sbjct: 618 QQQQNQQGTR 627


>04_03_0779 -
           19507771-19507992,19508678-19508990,19509235-19509296,
           19509845-19509904,19510260-19510367,19510452-19510561,
           19510656-19510701,19510812-19510884,19510970-19511100,
           19511270-19511356,19511871-19511968,19512849-19512971,
           19513091-19513286
          Length = 542

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 217 RTTLAAPG*SASLRAPESQRKRLPQPLPQHDDHGTKP 107
           R +  AP   A+L AP  +R+R P P P   D  + P
Sbjct: 21  RPSRVAPSPLAALAAPRRRRRRSPSPSPAPSDSDSNP 57


>04_04_0482 -
           25547393-25547455,25547767-25547866,25548154-25548203,
           25548883-25548969,25549343-25549429,25549510-25550009,
           25550061-25550134,25550548-25551632
          Length = 681

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 14  LTWKRPSTASGMKVLSTSSPSRGPLEDFSEK 106
           +T+K+P    G  V S SSP  G  E+ ++K
Sbjct: 186 ITFKKPKEVVGANVCSVSSPREGKGEEITDK 216


>08_01_0065 +
           452383-452629,452733-452868,453049-453118,453237-453330,
           453426-453639,453756-453897,454076-454246,454586-454780
          Length = 422

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -3

Query: 145 QPLPQHDDHGTKPLFGEIF*RPSTG*ACR*DLHTRRGRRPF--PC 17
           +PL   D    +P  GE+  +      C  DLH  +G  PF  PC
Sbjct: 60  RPLTLEDFRMPRPKAGELLIKTKACGVCHSDLHVLKGELPFSSPC 104


>08_02_0528 - 18217414-18217671
          Length = 85

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 21  GKGLR-PRLV*RSYLQAHPVEGL*KISPKSGFVPXXXXXXXXXXRRFL*DSG 173
           GKGL  PRL+ R  L A PV G+ K +   GF            RR + D+G
Sbjct: 7   GKGLASPRLLRR--LAADPVSGMGKRARHGGFARSHSPYFESQLRRLITDAG 56


>07_01_0627 +
           4685077-4685155,4685978-4686336,4686761-4686862,
           4687528-4687598,4687871-4687989,4688327-4688422,
           4688527-4688636,4688734-4688814,4689124-4689224,
           4689663-4689771,4689971-4690076,4690140-4690225,
           4690324-4690449,4690816-4690902
          Length = 543

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 162 RGSVSLNHYHNTMIMERSHFSEKSSKGPRLGELVDKTFIPDAV 34
           RGS+S  H    M  E+ H+S KSS+  +L   + K   P+++
Sbjct: 490 RGSISAEHGLGLMKAEKIHYS-KSSEAVQLMASIKKLLDPNSI 531


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,638,916
Number of Sequences: 37544
Number of extensions: 341994
Number of successful extensions: 1080
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)