Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A07
(561 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01390.1 68414.m00054 UDP-glucoronosyl/UDP-glucosyl transfera... 29 1.6
At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative sim... 29 2.8
At3g61030.1 68416.m06828 C2 domain-containing protein similar to... 29 2.8
At3g60950.1 68416.m06819 C2 domain-containing protein similar to... 29 2.8
At5g01630.1 68418.m00079 BRCA2 repeat-containing protein low sim... 28 3.7
At3g09000.1 68416.m01053 proline-rich family protein 28 4.9
At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogen... 27 8.6
At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogen... 27 8.6
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 27 8.6
>At1g01390.1 68414.m00054 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 480
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +3
Query: 267 LPASNARCFARLAGPVEVVGQRRLNPGDDQRQIPFLPVGFA*REKTCG 410
L S R + P E+V NP + FLP+GF R K G
Sbjct: 293 LAESGKRFIWVIRSPSEIVSSSYFNPHSETDPFSFLPIGFLDRTKEKG 340
>At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative
similar to aroB [Neisseria gonorrhoeae][GI:2661441];
contains 3-dehydroquinate synthase domain PF01761
Length = 442
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/55 (38%), Positives = 25/55 (45%)
Frame = +1
Query: 130 VVVVVEGDASSEIPVRAGLLISRAQLVLFADVAYFTLSLNKNYAPVYLRPTLDAL 294
VV V GD S I + AGLL L + N AP+YL T+DAL
Sbjct: 80 VVEVDLGDRSYPIYIGAGLLDHSELLQRHVHGKRVLVVTNDRVAPLYLDKTIDAL 134
>At3g61030.1 68416.m06828 C2 domain-containing protein similar to
CLB1 [Lycopersicon esculentum] GI:2789434; contains Pfam
profile PF00168: C2 domain
Length = 592
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 23 KRPSTASGMKVLSTSSPSRGPLED-FSEKWLRSMIIVLW*WLRE--TLPLRF 169
KR S A MKVL S SR E+ F KWL ++ +W ++ E T+ +R+
Sbjct: 14 KRVSKAVDMKVLG--SLSRDDFEENFVVKWLNKLLSKMWPYIAEAATMVVRY 63
>At3g60950.1 68416.m06819 C2 domain-containing protein similar to
CLB1 [Lycopersicon esculentum] GI:2789434; contains Pfam
profile PF00168: C2 domain
Length = 592
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 23 KRPSTASGMKVLSTSSPSRGPLED-FSEKWLRSMIIVLW*WLRE--TLPLRF 169
KR S A MKVL S SR E+ F KWL ++ +W ++ E T+ +R+
Sbjct: 14 KRVSKAVDMKVLG--SLSRDDFEENFVVKWLNKLLSKMWPYIAEAATMVVRY 63
>At5g01630.1 68418.m00079 BRCA2 repeat-containing protein low
similarity to breast cancer susceptibility protein
[Gallus gallus] GI:19568157; contains Pfam profile
PF00634: BRCA2 repeat
Length = 1155
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 233 KYATSANNTSCARLISKPARTGIS 162
K+ T+ + T+CA ISKPA G+S
Sbjct: 371 KFDTAVDETNCALNISKPATHGLS 394
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 23 KRPSTASGMKVLSTSSPSRG 82
+RPST +G ++S+ +PSRG
Sbjct: 246 RRPSTPTGPSIVSSKAPSRG 265
>At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogenase
family protein contains PFAM zinc-binding dehydrogenase
domain PF00107
Length = 427
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -3
Query: 145 QPLPQHDDHGTKPLFGEIF*RPSTG*ACR*DLHTRRGRRPF--PC 17
+PL + H +P EI + C DLH +G PF PC
Sbjct: 66 KPLTIEEFHIPRPKSNEILIKTKACGVCHSDLHVMKGEIPFASPC 110
>At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogenase
family protein contains PFAM zinc-binding dehydrogenase
domain PF00107
Length = 427
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -3
Query: 145 QPLPQHDDHGTKPLFGEIF*RPSTG*ACR*DLHTRRGRRPF--PC 17
+PL + H +P EI + C DLH +G PF PC
Sbjct: 66 KPLTIEEFHIPRPKSNEILIKTKACGVCHSDLHVMKGEIPFASPC 110
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 415 QPP--QVFSLQAKPTGRKGICR*SSPGFKRRWPTTSTGPASR 296
+PP V S + G+ G + G R PTT TGPASR
Sbjct: 125 RPPTRDVTSRRPARAGQTGTRKSPQDGAWARGPTTRTGPASR 166
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,091,436
Number of Sequences: 28952
Number of extensions: 246744
Number of successful extensions: 675
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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