Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A06
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    27   0.18 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.73 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.2  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -1

Query: 190 CRGDISAYYDVIVQFVIFQ*CTSIFLRYRRSLYNQQSQH---CDGQNHLIRLDPG 35
           C  D+S ++D + Q VI+  C  +  R  R L N  +      DG N +++   G
Sbjct: 132 CDVDVSTFFDQLGQEVIYTACVGLLERAFRCLGNNLTAFLTTLDGVNDVVQHQSG 186


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 380 KFINLRDANALKLEWGTDRDGDRGAYGDKNEWESD 484
           +++ L +   + LEWG    GD       +EW+SD
Sbjct: 173 QYLRLLEVPQINLEWGEGSSGD----DLSSEWDSD 203


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -1

Query: 565 ILSELLVHNFKVRPLVPPMRDYFPRHSITLPFVFVTVRTSIAISVC 428
           IL  L V    +  ++PP     P     L F  + V  SI I+VC
Sbjct: 287 ILLSLTVFFLLLAEIIPPTSLAIPLLGKYLLFTMILVTLSIWITVC 332


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 565 ILSELLVHNFKVRPLVPPMRDYFPRHSITLPFVFVTVRTSIAISV 431
           IL  L+V    V  ++PP     P  +  L F F+    SI ++V
Sbjct: 271 ILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTV 315


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 392 LRDANALKLEWGTDRDGDRGAYGDKNEWESD 484
           LRD N + L      DG  G  GD++   +D
Sbjct: 183 LRDINDIGLNRRDSDDGSDGNDGDESSCRAD 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,782
Number of Sequences: 438
Number of extensions: 3157
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)