Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A04
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 134 6e-33
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 31 0.068
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 26 3.4
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ... 26 3.4
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 5.9
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 25 7.8
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.8
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 7.8
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ... 25 7.8
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 134 bits (324), Expect = 6e-33
Identities = 68/135 (50%), Positives = 86/135 (63%), Gaps = 2/135 (1%)
Frame = +2
Query: 74 PAFQKLQEYYNLNSDKINIPQLFQQEPDRFNKFSLRLP--TPNDGEILLDYSKNRVDNET 247
PA+Q +Q +Y + + +LF ++ RF KFS DG IL D+SKN + ET
Sbjct: 10 PAWQAVQTHYESVGKHLVLKELFAKDSSRFEKFSFTFNGLKEEDGPILFDFSKNLITEET 69
Query: 248 ISLLLNLAKSRNVEQARDAMFSGKKINFTEDRAVLHIALRNRQNKPILVNGTDVTPDVNA 427
+ LL+ LAK NVE RDA+F+G+ INFTEDRAV H ALRN KP+ VNG DV P V
Sbjct: 70 VELLVKLAKEANVEGLRDALFAGEHINFTEDRAVFHPALRNVSEKPMKVNGQDVMPGVRK 129
Query: 428 VLKHMKEFSHQIISG 472
VL+HMKEFS + SG
Sbjct: 130 VLRHMKEFSDAVRSG 144
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 31.5 bits (68), Expect = 0.068
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 260 LNLAKSRNVEQARDAMFSGKKI--NFTEDRAVLHIALRNRQNKPILVNGTDVTPDVNAVL 433
+N + +++ Q +A ++ K+ + T LH+A R Q KP N V + +
Sbjct: 147 INSSPFKSLSQYWNAAYNKKESISSSTNSNIKLHLAARKYQTKPEKFNENSSISQVTSAI 206
Query: 434 KHMKEFSH 457
K K FSH
Sbjct: 207 KATKAFSH 214
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.8 bits (54), Expect = 3.4
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +2
Query: 122 INIPQLFQQE-PDRF--NKFSL-RLPTPNDGEILLDYSKNRVDNETISLLLN 265
IN+P + E R+ N F L RLPTP G++L N + T +L+
Sbjct: 73 INLPTNLESEVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILS 124
>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.8 bits (54), Expect = 3.4
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = -1
Query: 239 YPLCFLNNLVRFPHH-LEW 186
YP+C L N R P H +EW
Sbjct: 202 YPICTLANTPRLPEHCVEW 220
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 5.9
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 349 PSYCSPQSTKQTYLSQWDGCHSRC*CS-SEAHE 444
P SP S +T +S +GC C CS SE HE
Sbjct: 17 PRTSSPSSNFKTCVSNENGC-INCRCSPSEPHE 48
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 221 SKNRVDNETISLLLNLAKSRNVEQARDAMFSGKK 322
+ + +DNE S + L+ S NV+ + +FS K
Sbjct: 4 TNSSLDNENTSFVGKLSSSSNVDPTLNLLFSQSK 37
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 24.6 bits (51), Expect = 7.8
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +2
Query: 35 IIKMEPKINLKQDPAFQKLQEYYNLNSDKINIPQL 139
++K + + L AF +Q+ N+N + ++ P+L
Sbjct: 119 LLKFQNMLTLLMSRAFHSIQDEKNINIELLDTPKL 153
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 24.6 bits (51), Expect = 7.8
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 338 DRAVLHIALRNRQNKPILVNGTDVTPDVNAVLKHMKEF 451
D +LHI L Q P L D P + L +EF
Sbjct: 83 DEKLLHIDLLYTQIVPYLQKNNDDAPTIRCALNCTQEF 120
>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 96 SCSFWKAGSCFKLIFGSIFIIENTRAVKVRHD 1
S + WKA +KL ++ +TR VK++ D
Sbjct: 258 SSNSWKAFKEYKLPSNVYEVLHDTRCVKIQED 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,247
Number of Sequences: 5004
Number of extensions: 40233
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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