Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A04
         (473 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19976| Best HMM Match : PGI (HMM E-Value=0)                         83   1e-16
SB_37337| Best HMM Match : PGI (HMM E-Value=0)                         71   4e-13
SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.37 
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)               28   3.4  
SB_41227| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8e-08)         28   4.5  
SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0)               28   4.5  

>SB_19976| Best HMM Match : PGI (HMM E-Value=0)
          Length = 664

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 43/113 (38%), Positives = 70/113 (61%)
 Frame = +2

Query: 134 QLFQQEPDRFNKFSLRLPTPNDGEILLDYSKNRVDNETISLLLNLAKSRNVEQARDAMFS 313
           ++F Q+ +R  KF +        + ++DYSKN++  ET  LL++LA   N+++A +  FS
Sbjct: 3   EMFFQDSERVEKFHIEWE-----DFVIDYSKNKITEETKGLLIDLANEINLKEAIEDYFS 57

Query: 314 GKKINFTEDRAVLHIALRNRQNKPILVNGTDVTPDVNAVLKHMKEFSHQIISG 472
           G+ IN TE+RAVLH ALR   N  + V G ++ P++  V K +  F++ I+SG
Sbjct: 58  GEIINKTENRAVLHTALRADVNDEVYVEGKNIIPEIFEVKKKIDFFTNDIVSG 110


>SB_37337| Best HMM Match : PGI (HMM E-Value=0)
          Length = 391

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 46/116 (39%), Positives = 65/116 (56%)
 Frame = +2

Query: 59  NLKQDPAFQKLQEYYNLNSDKINIPQLFQQEPDRFNKFSLRLPTPNDGEILLDYSKNRVD 238
           +L   P +  L++++   +  +++ +LFQ++ +RF KFS  L T +DG +L+DYSKN V 
Sbjct: 15  SLTSSPEWAALEQHHKSTALALHMRKLFQEDANRFEKFSTFLDT-SDGRLLVDYSKNIVT 73

Query: 239 NETISLLLNLAKSRNVEQARDAMFSGKKINFTEDRAVLHIALRNRQNKPILVNGTD 406
            ET+ LL  L                       DRAVLHIALRNR N PILV+G D
Sbjct: 74  EETMKLLFRL-----------------------DRAVLHIALRNRSNTPILVDGKD 106


>SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 42  KWNRKLT*NRIQLSKNYKNTII*IQIKSTFLSCSNKNR 155
           KWNR  + NR  +S N +     I ++   L CS++NR
Sbjct: 381 KWNRNTSVNRSNISANARKACSCILVRFRLLLCSSENR 418


>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
          Length = 358

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +2

Query: 20  ARVFSIIKMEPKI-NLKQDPAFQKLQEYYNLNSDKINIPQLFQQEPDRFNKFSLRLPTPN 196
           A + +I+  +P+   L + P  ++L+  + L+  K+++  ++  +P+R  K  LRLP   
Sbjct: 264 ACLMAILLADPENPGLLEKPKVEELRTSF-LSGLKLHVETVYPSQPERLAKILLRLPALR 322

Query: 197 D 199
           D
Sbjct: 323 D 323


>SB_41227| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8e-08)
          Length = 450

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = +2

Query: 26  VFSIIKMEPKINLKQDPAFQKLQEYYNLNSDKINIPQLFQQE---PDRFNKFSLRLPTPN 196
           +F +I M     +K    FQ+ +EY     DK N   +F QE   P  F K    +P   
Sbjct: 123 IFQVISMNAGQKIKIKGPFQQQREYVRGVIDKKNPDLVFLQEFPSPREFRKEMKEIPRTA 182

Query: 197 DGEILLDYSKNRV 235
             +IL    K  +
Sbjct: 183 GYQILSGVHKKSI 195


>SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
          Length = 1311

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -3

Query: 429 TALTSGVTSVPLTKIGLFCRLRRAI*RTARSSVKLIFLPENIASLACSTFLLLAKFSSKL 250
           +++ S  +SVP     + CRL     R +     L  +P  ++S+ C    L ++FSS  
Sbjct: 417 SSIPSRFSSVPYRLSSVHCRLNSVPSRLSSVPFLLSLVPCRLSSVPCRLISLPSRFSSVP 476

Query: 249 MVSLSTL 229
             S S L
Sbjct: 477 SRSSSVL 483


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,191,725
Number of Sequences: 59808
Number of extensions: 270725
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)