Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A04
         (473 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.24 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.31 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.31 
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    21   6.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.9  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 335  EDRAVLHIALRNRQNKPILVNGTDVTPDV 421
            E RA LH ALR R  + I+V   +  P+V
Sbjct: 1144 EFRAALHEALRGRTAQLIIVQAENAYPEV 1172


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
 Frame = -3

Query: 456 WENSFMCFRTALTSGVTSVPLTKIGLFC--RLRRAI*RTARSSVKLIFLPENIASLACST 283
           WE  F C      +G T   L    LFC   LR    R      K+ F+ + + + A + 
Sbjct: 285 WEEVFDCLLKKERNGPTQTTLNATTLFCPPNLRLTSERGYEQESKVQFVVDAVYAFALAL 344

Query: 282 FLLLAKFSSKL 250
             L     SKL
Sbjct: 345 HNLQKDVCSKL 355


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
 Frame = -3

Query: 456 WENSFMCFRTALTSGVTSVPLTKIGLFC--RLRRAI*RTARSSVKLIFLPENIASLACST 283
           WE  F C      +G T   L    LFC   LR    R      K+ F+ + + + A + 
Sbjct: 375 WEEVFDCLLKKERNGPTQTTLNATTLFCPPNLRLTSERGYEQESKVQFVVDAVYAFALAL 434

Query: 282 FLLLAKFSSKL 250
             L     SKL
Sbjct: 435 HNLQKDVCSKL 445


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 318 KRSISLKTELSFILLSAIDKTNLS 389
           K  ISL T+ +   +  IDK NLS
Sbjct: 105 KSEISLATKQACGFIDNIDKRNLS 128


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -1

Query: 305 LHLWLVLHFCSW 270
           L +W++ +FC W
Sbjct: 181 LLVWILCYFCIW 192


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 53  KINLKQDPAFQKLQEYYNLNSD 118
           K  ++ DPA QK   YY   +D
Sbjct: 82  KSKMEIDPATQKDAGYYECQAD 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,986
Number of Sequences: 438
Number of extensions: 2798
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)