Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A03
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   1.5  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   3.5  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   3.5  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   4.6  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.6  

>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = +1

Query: 286 LLTYSS*GAKFQFLDYLQIDHILLSFFMFHGYSTRHINTAIFVGFVLPVSRLSIWNRKVV 465
           LL++      +   +Y  +D+  L      G +  H+N   F+G V+    L+I++R+ V
Sbjct: 464 LLSHEMFNPFYCLFEYSSVDNYTLQINPHSGINPEHLNYFKFIGRVI---GLAIFHRRFV 520

Query: 466 LSYFKI 483
            ++F +
Sbjct: 521 DAFFVV 526


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/52 (21%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 262 ILKDDSNQLLTYSS*GAKFQF-LDYLQIDHILLSFFMFHGYSTRHINTAIFV 414
           ++ +D N++      G K +  L+   +  +L+ FF ++G+S  ++++ + V
Sbjct: 237 LMSNDDNKMFVDDIVGFKEKATLNKTSLGRLLIDFFYYYGFSFNYLDSVVSV 288


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +3

Query: 333 FTNRSHSAFIFHVSW---VLDSTH*YRN 407
           F+ +SHS+ +F V W   VLD  H  RN
Sbjct: 636 FSQQSHSSGLFSVHWFRVVLDEGHNIRN 663


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 247 MVDSLG-IMLMSPLAVLAAWLSGRTLAGLMAQ 155
           ++ SL  ++++SPL VLA+W +   L  L+ +
Sbjct: 683 IISSLSDVLVLSPLEVLASWYAADLLDALLME 714


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 134 PRGHVVVLCH*TSEGTSGKPCSK 202
           P G++   CH T    SG+PC +
Sbjct: 138 PPGYMCYKCHNTGYKDSGRPCGR 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,786
Number of Sequences: 5004
Number of extensions: 40305
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)